YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CE34271

General Information:
Name(s) found: CE34271 [WormBase]
Description(s) found:
SHOW ONLY BEST
  • WBGene00016652 locus:got-2.1 Aspartate aminotransferase status:Confirmed UniProt:O01804 protein_id:CCD67304.1 [WormBase]
  • gi|71981858|ref|NP_491413.2| hypothetical protein C44E4.3 [Caenorhabditis elegans] [NCBI NR]
  • gi|31746666|gb|AAD47121.2|AF003140_7 Hypothetical protein C44E4.3 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep104.fasta]
  • Hypothetical protein C44E4.3 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • CE34271 WBGene00016652 aminotransferase status:Partially_confirmed TR:O01804 protein_id:AAD47121.2 [wormpep150.fasta]
  • 34271 WBGene00016652 aminotransferase status:Partially_confirmed TR:O01804 protein_id:AAD47121.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • aminotransferase status:Partially_confirmed TR:O01804 protein_id:AAD47121.2 [wormpep115.fasta.reversed]
  • CE34271 WBGene00016652 aminotransferase status:Partially_confirmed UniProt:O01804_CAEEL protein_id:AAD47121.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE34271 WBGene00016652 aminotransferase status:Partially_confirmed UniProt:O01804_CAEEL protein_id:AAD47121.2| [wormORF-contam.fasta]
  • C44E4.3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE34271 WBGene00016652 aminotransferase status:Confirmed UniProt:O01804 protein_id:AAD47121.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE34271 WBGene00016652 locus:got-2.1 aminotransferase status:Confirmed UniProt:O01804 protein_id:CCD67304.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE34271 WBGene00016652 locus:got-2.1 status:Confirmed UniProt:O01804 protein_id:CCD67304.1 Aspartate aminotransferase [wormpep246-ecoli-contam.fasta]
  • Aspartate aminotransferase OS=Caenorhabditis elegans GN=got-2.1 PE=1 SV=3 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 419 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: biosynthetic process [IEALink to PubMed article]
    Molecular Function: pyridoxal phosphate binding [IEALink to PubMed article]
    transferase activity, transferring nitrogenous groups [IEALink to PubMed article]
    catalytic activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAFFRRFMS TTTVTAQPVL PWFRNVPLAP ADPILGVTEA FKKDTNPNKI NLGVGAYRDD  60
   61 QGKPFVLRAV REAEQQIIDA KMDKEYSTIT GVPEFAPLAA KLAFGDNSEV IRDGRVFTTQ 120
  121 SISGTGALRI GGQFVEKFIP SKTLFYPTPT WANHLPVFRN SGLSIQPYRY YNQETLGFDV 180
  181 EGALEDISKM PEGSVILLHA CAHNPTGVDP TKEQWKKLSQ VLKERKILPF FDMAYQGFAS 240
  241 GDVDDDAFAL RHFIEQGHNV LVAQSFAKNM GLYGERVGAF SIVCDSAEEA IRVGSQMRII 300
  301 IRPMISMPPL HGARIASRIL SNPELKKSWL EDVKLMADRI KSMRTALKDG LKAEGSTLNW 360
  361 DHITNQIGMF CFTGINEKQV QKLIKEHSVY LTNDGRISIS GINTGNVAYL AKALHDVTK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..419] PSI-BLAST 90.09691 DOMAIN CLOSURE IN MITOCHONDRIAL ASPARTATE AMINOTRANSFERASE

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • L-aspartate:2-oxoglutarate aminotransferase activity
    		•  6.52158261185762 bayes_pls_golite062009
  • phosphatidylserine decarboxylase activity
    		•  3.52333113038086 bayes_pls_golite062009
  • catalytic activity
    		•  2.29878871754893 bayes_pls_golite062009
  • glycine dehydrogenase (decarboxylating) activity
    		•  1.46601963907552 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor
    		•  1.46601963907552 bayes_pls_golite062009
  • transferase activity
    		•  1.44093490824786 bayes_pls_golite062009
  • glutamate decarboxylase activity
    		•  1.34215658716536 bayes_pls_golite062009
  • transferase activity, transferring nitrogenous groups
    		•  1.28316822767388 bayes_pls_golite062009
  • transaminase activity
    		•  1.24990480711889 bayes_pls_golite062009
  • 4-aminobutyrate transaminase activity
    		•  1.11017195698597 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.977210827616757 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.892872530648552 bayes_pls_golite062009
  • binding
    		•  0.892049641082766 bayes_pls_golite062009
  • N-succinyltransferase activity
    		•  0.87264568471543 bayes_pls_golite062009
  • DNA binding
    		•  0.803965264969424 bayes_pls_golite062009
  • N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
    		•  0.753443687983955 bayes_pls_golite062009
  • vitamin binding
    		•  0.66463470119531 bayes_pls_golite062009
  • transcription factor activity
    		•  0.597417107954964 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  0.50269055590758 bayes_pls_golite062009
  • alanine-glyoxylate transaminase activity
    		•  0.48682493494502 bayes_pls_golite062009
  • hydrolase activity
    		•  0.343938599116946 bayes_pls_golite062009
  • vitamin B6 binding
    		•  0.16957228630576 bayes_pls_golite062009
  • pyridoxal phosphate binding
    		•  0.16957228630576 bayes_pls_golite062009
  • ligase activity
    		•  0.103307018783573 bayes_pls_golite062009
  • aromatic-amino-acid:2-oxoglutarate aminotransferase activity
    		•  0.0916183433120769 bayes_pls_golite062009
  • cystathionine beta-lyase activity
    		•  0.0833010353195099 bayes_pls_golite062009
  • amine binding
    		•  0.00719250700539997 bayes_pls_golite062009
  • kynureninase activity
    		•  0.0041576792340694 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle