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Protein Overview: ced-6

General Information:
Name(s) found: ced-6 / CE33657 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00000420 locus:ced-6 Cell death protein 6 status:Confirmed UniProt:O76337 protein_id:CCD63140.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 492 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: regulation of transcription, DNA-dependent [IEALink to PubMed article]
    engulfment of apoptotic cell [IMPLink to PubMed article]
    programmed cell death [IMPLink to PubMed article]
    Molecular Function: transcription factor activity [IEALink to PubMed article]
    protein phosphorylated amino acid binding [ISSLink to PubMed article]
    sequence-specific DNA binding [IEALink to PubMed article]
    protein dimerization activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDIYKTFK RSVSGIVGGN NINGEGSSSP STSAPQVKYR GGTGRTWIHP PDYLINGHVE  60
   61 YVARFLGCVE TPKANGSDVA REAIHAIRFQ RDLKRSEQTR ETAKLQKVEI RISIDNVIIA 120
  121 DIKTKAPMYT FPLGRISFCA DDKDDKRMFS FIARAEGASG KPSCYAFTSE KLAEDITLTI 180
  181 GEAFDLAYKR FLDKNRTSLE NQKQIYILKK KIVELETENQ VLIERLAEAL RANSKADYEN 240
  241 TGPPIYPGLG PPALPLSPMP QGPPPNIPPS SIYSMPRAND LPPTEMAPTL PQISTSSNGA 300
  301 SPSVSPASTS PSGPAPSIPP PRPPALAPPP PVAPRRNPVV SPKNSTAGLL DGLELGSAEP 360
  361 AKKAPSNIFD DSFDPRAGEK KSTAAEYNPF GADFLSGIQN GKEAPPSASA ELLASEAIAR 420
  421 LPKPESSSVP PKKTAAEYDA MINEVEKKLA AMSSGSFEFG QLQTGDLGGI EGESDYGTPS 480
  481 DRLNPKMMNL KQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..198] PSI-BLAST 45.154902 Numb
    2 View Details [199..492] MSA 8.203995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.80330385662185 bayes_pls_golite062009
  • protein binding
    		•  1.61059302945064 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle