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Protein Overview: clp-4

General Information:
Name(s) found: clp-4 / CE33220 [WormBase]
Description(s) found:
Found 16 descriptions.
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  • WBGene00000545 locus:clp-4 status:Confirmed UniProt:Q8IAA8 protein_id:CCD73777.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 603 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEALink to PubMed article]
    Biological Process: proteolysis [IEALink to PubMed article]
    Molecular Function: cysteine-type endopeptidase activity [IEALink to PubMed article]
    calcium-dependent cysteine-type endopeptidase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANHAKLVDQ EIYRSPVDDF ELNYQEYLND DDDDKQEAPV AVSKAPKGKG SNHGLGCRMK  60
   61 GLFDGFGGTD LKTIMRHLRR RRPKSGQALT NFMLSGNMEK VVDQHVKDFV HHFGRINPEN 120
  121 GRIMGALRGN DFFNFGGLHN NLGNTGKVYL DNLMKGKCGK KRKVHKFKPI VVEELDFGAP 180
  181 KPAVPATPKA PVAPVAPVIP APAVTPQKPK VDEPTYADSV SDFGLDFETE REKCLRNKTL 240
  241 FEDPEFPATA ASLYYRTPPR DRIIWKRPGE IIANPQLITQ GESRFDVKQG ALGDCWFLAA 300
  301 LANITLYDAL FYRIVPPNQS FTENYAGIFH FQFWHYGKWV DVVVDDRLPT VNNQLYYLHS 360
  361 ADNTEFWSAL VEKAYAKLHG GYENLDGGTT AEALEDFTGG LTEYFDLRKS EKAAVLAALV 420
  421 KGMEMGSLFG CSIDADANIK EAQLRNGLVC GHAYSITAIH SITYYGEDTT LLRLRNPWGN 480
  481 EKEWNGAWSD GSSEWSKIDE ATKKQIDVQF ARDGEFWMSF EDFFSNFTQM EVCNLTAEIF 540
  541 DEIAEMTGVN RATETVEEEH QWHEIMEDGE WSSKHSWRLQ QQPIYLPQEP SILHFLHSTT 600
  601 ILY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..197] PSI-BLAST 20.522879 No description for 2fe0A was found.
    2 View Details [198..603] PSI-BLAST 131.0 Crystal Structure of a mu-like calpain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.529663942126259 bayes_pls_golite062009
  • hydrolase activity
    		•  0.16837900182603 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle