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View Structure Prediction Details

Protein: clp-4
Organism: Caenorhabditis elegans
Length: 603 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clp-4.

Description E-value Query
Range
Subject
Range
clp-4 - status:Confirmed UniProt:Q8IAA9 protein_id:AAO12402.1
737.0 [0..1] [593..1]

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Predicted Domain #1
Region A:
Residues: [1-197]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANHAKLVDQ EIYRSPVDDF ELNYQEYLND DDDDKQEAPV AVSKAPKGKG SNHGLGCRMK  60
   61 GLFDGFGGTD LKTIMRHLRR RRPKSGQALT NFMLSGNMEK VVDQHVKDFV HHFGRINPEN 120
  121 GRIMGALRGN DFFNFGGLHN NLGNTGKVYL DNLMKGKCGK KRKVHKFKPI VVEELDFGAP 180
  181 KPAVPATPKA PVAPVAP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.522879
Match: 2fe0A
Description: No description for 2fe0A was found.

Predicted Domain #2
Region A:
Residues: [198-603]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VIPAPAVTPQ KPKVDEPTYA DSVSDFGLDF ETEREKCLRN KTLFEDPEFP ATAASLYYRT  60
   61 PPRDRIIWKR PGEIIANPQL ITQGESRFDV KQGALGDCWF LAALANITLY DALFYRIVPP 120
  121 NQSFTENYAG IFHFQFWHYG KWVDVVVDDR LPTVNNQLYY LHSADNTEFW SALVEKAYAK 180
  181 LHGGYENLDG GTTAEALEDF TGGLTEYFDL RKSEKAAVLA ALVKGMEMGS LFGCSIDADA 240
  241 NIKEAQLRNG LVCGHAYSIT AIHSITYYGE DTTLLRLRNP WGNEKEWNGA WSDGSSEWSK 300
  301 IDEATKKQID VQFARDGEFW MSFEDFFSNF TQMEVCNLTA EIFDEIAEMT GVNRATETVE 360
  361 EEHQWHEIME DGEWSSKHSW RLQQQPIYLP QEPSILHFLH STTILY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 131.0
Match: 1qxpA
Description: Crystal Structure of a mu-like calpain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.529663942126259 bayes_pls_golite062009
hydrolase activity 0.16837900182603 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
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