YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CE33172

General Information:
Name(s) found: CE33172 [WormBase]
Description(s) found:
Found 16 descriptions.
SHOW ALL
  • WBGene00020346 status:Partially_confirmed UniProt:Q86NJ9 protein_id:CCD67609.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 695 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    intracellular [IEALink to PubMed article]
    Biological Process: mRNA processing [IEALink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]
    RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNDVDNTKI TLSLGKCGYL PQDVRTMTKF DKNTKQIRTF AFVEFSNRET AEQWMTDYEG  60
   61 WLTLDDGRTL AVEYAKGDPA AGSGNKGDDW ICAHCSMNNF VKRQTCFKCE ISKDQSMELE 120
  121 KLGAHMVGMT PCDTLLIRGL PDGINNSLIF DSLGALVCLS SISMIKLSES KRFAYLQMKS 180
  181 ADEAKMLLNL TYKSPIRIKD KDVQVSWCRD SMSKLIQQQM TMLTAGPGKN SVATGSLAQG 240
  241 NMTGAEIAAA ALSKANAVRQ ASQQVGQIMT GLPAPAANMI PPNFSVPPPN LSVPPPMQAT 300
  301 QPEHQNGVIG MTQTPKGLLP RYLPPNPLTF AHDPNLGYYV DPITKFCYDS ATGYYFNNAT 360
  361 SQWCNWDLTH HTYFPVETPA VINSADPEEE KMKKNEEGPK TAQDLVKDMA KWAKRQEKDK 420
  421 KKVQISIKGK ETKGIELKNV FSNEKQKRIA QTAALFDDDE EEDQEEEVRG RRSEEPSTSS 480
  481 SFSSVPLAPR KSTLQDVRDA MERALYDETK KTCMLCKRAF SDVEVLRKHV EKSDLHRNNL 540
  541 EAKRAEWGRE TAAKLQEEEE DASAPDLPKI VYRDRAKERR RQFGIDSTGY AFDVMGGPPG 600
  601 PTSVRHEETI RKVSEEASKR PLDESNIGNR LLKSMGWKEG QGVGKHAQGI VNPIEAERFV 660
  661 QGAGLGAAGS KMRHGAEASH KEKTRQALYS RYHDA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..208] PSI-BLAST 27.69897 Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)
    2 View Details [209..312] deduced N/A No confident structure predictions are available.
    3 View Details [313..520] deduced N/A No confident structure predictions are available.
    4 View Details [521..695] MSA 16.147993 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  6.73097473547076 bayes_pls_golite062009
    		• 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
    		•  5.29759606920196 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.92126426323641 bayes_pls_golite062009
  • binding
    		•  3.64400841800969 bayes_pls_golite062009
  • snRNA binding
    		•  3.28448936696877 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  3.11990160533699 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.93798024346416 bayes_pls_golite062009
  • U1 snRNA binding
    		•  2.26303528058407 bayes_pls_golite062009
  • protein binding
    		•  2.17260848225967 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.92450390013691 bayes_pls_golite062009
  • DNA binding
    		•  1.8021593476478 bayes_pls_golite062009
  • structural molecule activity
    		•  1.29928829870122 bayes_pls_golite062009
  • transcription factor activity
    		•  1.15127506309683 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.591700155096213 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.425042944899091 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.383589644462932 bayes_pls_golite062009
  • snoRNA binding
    		•  0.0568636182001701 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle