| Protein: | CE33172 |
| Organism: | Caenorhabditis elegans |
| Length: | 695 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE33172.
| Description | E-value | Query Range |
Subject Range |
|
|
272.0 | [0..1] | [694..104] |
|
Region A: Residues: [1-208] |
1 11 21 31 41 51
| | | | | |
1 MPNDVDNTKI TLSLGKCGYL PQDVRTMTKF DKNTKQIRTF AFVEFSNRET AEQWMTDYEG 60
61 WLTLDDGRTL AVEYAKGDPA AGSGNKGDDW ICAHCSMNNF VKRQTCFKCE ISKDQSMELE 120
121 KLGAHMVGMT PCDTLLIRGL PDGINNSLIF DSLGALVCLS SISMIKLSES KRFAYLQMKS 180
181 ADEAKMLLNL TYKSPIRIKD KDVQVSWC
|
| Detection Method: |  |
| Confidence: | 27.69897 |
| Match: | 1po6A |
| Description: | Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| snRNA binding | 3.28448936696877 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.26303528058407 | bayes_pls_golite062009 |
| protein binding | 2.17260848225967 | bayes_pls_golite062009 |
| transcription regulator activity | 1.92450390013691 | bayes_pls_golite062009 |
| DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription factor activity | 1.15127506309683 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.425042944899091 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
| snoRNA binding | 0.0568636182001701 | bayes_pls_golite062009 |
|
Region A: Residues: [209-312] |
1 11 21 31 41 51
| | | | | |
1 RDSMSKLIQQ QMTMLTAGPG KNSVATGSLA QGNMTGAEIA AAALSKANAV RQASQQVGQI 60
61 MTGLPAPAAN MIPPNFSVPP PNLSVPPPMQ ATQPEHQNGV IGMT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [313-520] |
1 11 21 31 41 51
| | | | | |
1 QTPKGLLPRY LPPNPLTFAH DPNLGYYVDP ITKFCYDSAT GYYFNNATSQ WCNWDLTHHT 60
61 YFPVETPAVI NSADPEEEKM KKNEEGPKTA QDLVKDMAKW AKRQEKDKKK VQISIKGKET 120
121 KGIELKNVFS NEKQKRIAQT AALFDDDEEE DQEEEVRGRR SEEPSTSSSF SSVPLAPRKS 180
181 TLQDVRDAME RALYDETKKT CMLCKRAF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [521-695] |
1 11 21 31 41 51
| | | | | |
1 SDVEVLRKHV EKSDLHRNNL EAKRAEWGRE TAAKLQEEEE DASAPDLPKI VYRDRAKERR 60
61 RQFGIDSTGY AFDVMGGPPG PTSVRHEETI RKVSEEASKR PLDESNIGNR LLKSMGWKEG 120
121 QGVGKHAQGI VNPIEAERFV QGAGLGAAGS KMRHGAEASH KEKTRQALYS RYHDA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
