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Protein Overview: CE31656

General Information:
Name(s) found: CE31656 [WormBase]
Description(s) found:
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  • WBGene00021921 status:Partially_confirmed UniProt:Q8MXS6 protein_id:CCD74061.1 [WormBase]
  • gi|25148310|ref|NP_741301.1| hypothetical protein Y55F3AM.3 [Caenorhabditis elegans] [NCBI NR]
  • gi|22532839|gb|AAM97977.1| Hypothetical protein Y55F3AM.3c [Caenorhabditis elegans] [NCBI NR]
  • [wormpep88.fasta]
  • CE31656 WBGene00021921 status:Partially_confirmed TR:Q8MXS6 protein_id:AAM97977.1 [wormpep150.fasta]
  • 31656 WBGene00021921 status:Partially_confirmed TR:Q8MXS6 protein_id:AAM97977.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • RNA-binding region containing 2 like (47.5 kD) (4B771) [Caenorhabditis elegans]gi|22532839|gb|AAM97977.1| Hypothetical protein Y55F3AM.3c [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q8MXS6 protein_id:AAM97977.1 [wormpep115.fasta.reversed]
  • CE31656 WBGene00021921 status:Partially_confirmed UniProt:Q8MXS6_CAEEL protein_id:AAM97977.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE31656 WBGene00021921 status:Partially_confirmed UniProt:Q8MXS6_CAEEL protein_id:AAM97977.1| [wormORF-contam.fasta]
  • Hypothetical protein Y55F3AM.3c [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Y55F3AM.3c [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE31656 WBGene00021921 status:Partially_confirmed UniProt:Q8MXS6 protein_id:AAM97977.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • CE31656 WBGene00021921 status:Partially_confirmed UniProt:Q8MXS6 protein_id:CCD74061.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Isoform of Q9N368, Uncharacterized protein OS=Caenorhabditis elegans GN=CELE_Y55F3AM.3 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 435 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed article]
    morphogenesis of an epithelium [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    mRNA processing [IEALink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFNPRHSPP KNAKLELTAE ERDQRTLLIM QIARDTRPRD LEEFFSAVGA VRDVRIITDS  60
   61 RTGRSKGICY VEFWDEESVP LGLALNGQRL MGAPLQIQRT CAERNRAANS SVASTLGFVA 120
  121 PGNKGPTHVL VENLHPKIDE KMIRDIFESF GRIEKIDLEV DSNRENRGFA TITFRNADDA 180
  181 QKSCEQLNNF ELAGRCIRLS IKQESQAPAV KKEEASIHQR SLDDVGDRQG FSLGAGGRQQ 240
  241 LMAKLAQGTG SGMELTASAQ MAAQHAGHSQ IPSIATQCFL LSNMFDPSKE TEPAWDHDIR 300
  301 EDVIEQCLAH GGALHVFVDK GSEQGNVYVK CPSIVIAHQA VSALHGRWFS GKVITANYVP 360
  361 VNSYHDLFPD AVHARIVLTT RGAAPVVPIV PMVPVVPPQG IANGYGAYGM MAPAHGAPPP 420
  421 PPPQQQGQYG GYGRY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..225] PSI-BLAST 47.0 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
    2 View Details [226..386] FFAS03 4.83 No description for 2ditA was found.
    3 View Details [387..435] PSI-BLAST 3.522879 Sec24

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  6.73097473547076 bayes_pls_golite062009
    		• 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
    		•  5.29759606920196 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.92126426323641 bayes_pls_golite062009
  • binding
    		•  3.64400841800969 bayes_pls_golite062009
  • snRNA binding
    		•  3.28448936696877 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  3.11990160533699 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.93798024346416 bayes_pls_golite062009
  • U1 snRNA binding
    		•  2.26303528058407 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.92450390013691 bayes_pls_golite062009
  • DNA binding
    		•  1.8021593476478 bayes_pls_golite062009
  • structural molecule activity
    		•  1.29928829870122 bayes_pls_golite062009
  • transcription factor activity
    		•  1.15127506309683 bayes_pls_golite062009
  • protein binding
    		•  1.12215421354121 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.591700155096213 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.383589644462932 bayes_pls_golite062009
    2
    Term Confidence Notes
    		• 6.40066880991253 bayes_pls_golite062009
  • RNA binding
    		•  6.32219487559982 bayes_pls_golite062009
  • mRNA binding
    		•  4.87640532914983 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.65259034341669 bayes_pls_golite062009
  • binding
    		•  3.48033873254013 bayes_pls_golite062009
  • snRNA binding
    		•  2.99850361909067 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  2.7133834347239 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.55628738360472 bayes_pls_golite062009
  • U1 snRNA binding
    		•  1.97699928565988 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.94691250607537 bayes_pls_golite062009
  • DNA binding
    		•  1.80828042019548 bayes_pls_golite062009
  • structural molecule activity
    		•  1.30816853575581 bayes_pls_golite062009
  • transcription factor activity
    		•  1.17242427495624 bayes_pls_golite062009
  • protein binding
    		•  1.05805521997665 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.327072171076297 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.229644510503376 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle