| Protein: | CE31656 |
| Organism: | Caenorhabditis elegans |
| Length: | 435 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE31656.
| Description | E-value | Query Range |
Subject Range |
|
|
267.0 | [0..15] | [435..1] |
|
Region A: Residues: [1-225] |
1 11 21 31 41 51
| | | | | |
1 MPFNPRHSPP KNAKLELTAE ERDQRTLLIM QIARDTRPRD LEEFFSAVGA VRDVRIITDS 60
61 RTGRSKGICY VEFWDEESVP LGLALNGQRL MGAPLQIQRT CAERNRAANS SVASTLGFVA 120
121 PGNKGPTHVL VENLHPKIDE KMIRDIFESF GRIEKIDLEV DSNRENRGFA TITFRNADDA 180
181 QKSCEQLNNF ELAGRCIRLS IKQESQAPAV KKEEASIHQR SLDDV
|
| Detection Method: |  |
| Confidence: | 47.0 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| snRNA binding | 3.28448936696877 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.26303528058407 | bayes_pls_golite062009 |
| transcription regulator activity | 1.92450390013691 | bayes_pls_golite062009 |
| DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription factor activity | 1.15127506309683 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
|
Region A: Residues: [226-386] |
1 11 21 31 41 51
| | | | | |
1 GDRQGFSLGA GGRQQLMAKL AQGTGSGMEL TASAQMAAQH AGHSQIPSIA TQCFLLSNMF 60
61 DPSKETEPAW DHDIREDVIE QCLAHGGALH VFVDKGSEQG NVYVKCPSIV IAHQAVSALH 120
121 GRWFSGKVIT ANYVPVNSYH DLFPDAVHAR IVLTTRGAAP V
|
| Detection Method: | |
| Confidence: | 4.83 |
| Match: | 2ditA |
| Description: | No description for 2ditA was found. |
| Term | Confidence | Notes |
| 6.40066880991253 | bayes_pls_golite062009 | |
| RNA binding | 6.32219487559982 | bayes_pls_golite062009 |
| mRNA binding | 4.87640532914983 | bayes_pls_golite062009 |
| nucleic acid binding | 4.65259034341669 | bayes_pls_golite062009 |
| binding | 3.48033873254013 | bayes_pls_golite062009 |
| snRNA binding | 2.99850361909067 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 2.7133834347239 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.55628738360472 | bayes_pls_golite062009 |
| U1 snRNA binding | 1.97699928565988 | bayes_pls_golite062009 |
| transcription regulator activity | 1.94691250607537 | bayes_pls_golite062009 |
| DNA binding | 1.80828042019548 | bayes_pls_golite062009 |
| structural molecule activity | 1.30816853575581 | bayes_pls_golite062009 |
| transcription factor activity | 1.17242427495624 | bayes_pls_golite062009 |
| protein binding | 1.05805521997665 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.327072171076297 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.229644510503376 | bayes_pls_golite062009 |
|
Region A: Residues: [387-435] |
1 11 21 31 41 51
| | | | | |
1 VPIVPMVPVV PPQGIANGYG AYGMMAPAHG APPPPPPQQQ GQYGGYGRY
|
| Detection Method: | |
| Confidence: | 3.522879 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
