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Protein Overview: ttx-1

General Information:
Name(s) found: ttx-1 / CE31090 [WormBase]
Description(s) found:
Found 14 descriptions.
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  • WBGene00006652 locus:ttx-1 status:Partially_confirmed UniProt:Q9U2Z0 protein_id:CAB60478.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 391 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: thermosensory behavior [IMPLink to PubMed article]
    regulation of transcription, DNA-dependent [IEALink to PubMed article]
    Molecular Function: transcription factor activity [IEALink to PubMed article]
    sequence-specific DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTSSSAPS DSIVELIQSQ NLSGSGSGTG GNTGSTTMNS GNFIPTPSLT GTGASQSSGS  60
   61 ASSGNFVSPD ETDTKPSPSL MDHNDPTSSL SQQLAQGATL TSPYSTTTVD PSSLYFQLSP 120
  121 MSYIPNVSSA TTVAAANMSA YFNQKSAYPT SHLGFPSNVG SHSFLQSNMY IPSSLSDCPT 180
  181 ATMGSMSWNA NQPGFSRKQR RERTTFTRNQ LEILESYFVK TRYPDIFMRE DMAHKIQLPE 240
  241 SRVQVWFKNR RAKARQQKKT LAPSNSGVTC SGNNGSTGGG SSNGSTGSEV QPSSPATTDS 300
  301 ELKFSEVIKE ECDEQSISPS ADDQKGVNSY INPISSSSGT TSYNGTSSFR PQAQYPYASY 360
  361 PAYDFQYSQS NTNSTNTYTL DGNSTWKFQM S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..181] MSA 5.972997 View MSA. No confident structure predictions are available.
    2 View Details [182..279] PSI-BLAST 21.0 Paired protein
    3 View Details [280..391] MSA 2.647996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.13427696575232 bayes_pls_golite062009
  • DNA binding
    		•  0.467083401711478 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.28774305606155 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.211538850702859 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle