| Protein: | ttx-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 391 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ttx-1.
| Description | E-value | Query Range |
Subject Range |
|
|
119.0 | [0..2] | [314..376] |
|
Region A: Residues: [1-181] |
1 11 21 31 41 51
| | | | | |
1 MSLTSSSAPS DSIVELIQSQ NLSGSGSGTG GNTGSTTMNS GNFIPTPSLT GTGASQSSGS 60
61 ASSGNFVSPD ETDTKPSPSL MDHNDPTSSL SQQLAQGATL TSPYSTTTVD PSSLYFQLSP 120
121 MSYIPNVSSA TTVAAANMSA YFNQKSAYPT SHLGFPSNVG SHSFLQSNMY IPSSLSDCPT 180
181 A
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [182-279] |
1 11 21 31 41 51
| | | | | |
1 TMGSMSWNAN QPGFSRKQRR ERTTFTRNQL EILESYFVKT RYPDIFMRED MAHKIQLPES 60
61 RVQVWFKNRR AKARQQKKTL APSNSGVTCS GNNGSTGG
|
| Detection Method: | |
| Confidence: | 21.0 |
| Match: | 1fjlA |
| Description: | Paired protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.13427696575232 | bayes_pls_golite062009 |
| DNA binding | 0.467083401711478 | bayes_pls_golite062009 |
| nucleic acid binding | 0.28774305606155 | bayes_pls_golite062009 |
| transcription regulator activity | 0.211538850702859 | bayes_pls_golite062009 |
|
Region A: Residues: [280-391] |
1 11 21 31 41 51
| | | | | |
1 GSSNGSTGSE VQPSSPATTD SELKFSEVIK EECDEQSISP SADDQKGVNS YINPISSSSG 60
61 TTSYNGTSSF RPQAQYPYAS YPAYDFQYSQ SNTNSTNTYT LDGNSTWKFQ MS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
