YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: lin-1

General Information:
Name(s) found: lin-1 / CE31440 [WormBase]
Description(s) found:
Found 20 descriptions.
SHOW ALL
  • WBGene00002990 locus:lin-1 status:Confirmed UniProt:G5EDL0 protein_id:CCD66965.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 441 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: negative regulation of vulval development [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    regulation of cell fate specification [IMPLink to PubMed article]
    vulval development [IGILink to PubMed article][IMPLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    regulation of transcription, DNA-dependent [IEALink to PubMed article]
    Molecular Function: transcription factor activity [IEALink to PubMed article]
    sequence-specific DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHIDLLKVK KEPPSSSEEA EEEESPKHTI EGILDIRKKE MNVSDLMCTR SSTPPTSSSV  60
   61 DSIITLWQFL LELLQQDQNG DIIEWTRGTD GEFRLIDAEA VARKWGQRKA KPHMNYDKLS 120
  121 RALRYYYEKN IIKKVIGKKF VYRFVTTDAH APPTADFSSN MNMKMCYVKD EKDIRHEIPS 180
  181 FMTSLQAPPP PPPPPQNPRG NTDFSALSLL GTDSPTTHSV STPSPTDSVC SPSSSVASSA 240
  241 TPSTSSPVDE SRQCRKRSLS PSTTSSTTAP PPPPQPPTKK GMKPNPLNLT ATSNFSLQPS 300
  301 ISSPLLMLQQ HHQNSPLFQA QISQLYTYAA LASAGLYGPQ ISPHLASQSP FRSPLVTPKN 360
  361 LGLGELGSSG RTPGLGESQV FQFPPVSAFQ ATNPLLNTFS NLISPMAPFM MPPSQSSTSF 420
  421 KFPSSTDSLK TPTVPIKMPT L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..171] PSI-BLAST 43.221849 ETS-1 transcription factor, residues 331-440
    2 View Details [172..333] FFAS03 1.05 No description for 2j63A was found.
    3 View Details [334..441] MSA 5.167996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  2.20862608643434 bayes_pls_golite062009
  • binding
    		•  2.18911933843505 bayes_pls_golite062009
  • DNA binding
    		•  1.78415975685994 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.64150017312029 bayes_pls_golite062009
  • transcription factor activity
    		•  1.30418360837022 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.55739080981393 bayes_pls_golite062009
  • transcription activator activity
    		•  0.14130464856269 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.13573040816325 bayes_pls_golite062009
  • protein binding
    		•  0.035220363090062 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle