| Protein: | lin-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 441 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lin-1.
| Description | E-value | Query Range |
Subject Range |
|
|
180.0 | [0..45] | [167..16] |
|
Region A: Residues: [1-171] |
1 11 21 31 41 51
| | | | | |
1 MNHIDLLKVK KEPPSSSEEA EEEESPKHTI EGILDIRKKE MNVSDLMCTR SSTPPTSSSV 60
61 DSIITLWQFL LELLQQDQNG DIIEWTRGTD GEFRLIDAEA VARKWGQRKA KPHMNYDKLS 120
121 RALRYYYEKN IIKKVIGKKF VYRFVTTDAH APPTADFSSN MNMKMCYVKD E
|
| Detection Method: |  |
| Confidence: | 43.221849 |
| Match: | 1mdmB |
| Description: | ETS-1 transcription factor, residues 331-440 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 2.20862608643434 | bayes_pls_golite062009 |
| binding | 2.18911933843505 | bayes_pls_golite062009 |
| DNA binding | 1.78415975685994 | bayes_pls_golite062009 |
| nucleic acid binding | 1.64150017312029 | bayes_pls_golite062009 |
| transcription factor activity | 1.30418360837022 | bayes_pls_golite062009 |
| transcription repressor activity | 0.55739080981393 | bayes_pls_golite062009 |
| transcription activator activity | 0.14130464856269 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.13573040816325 | bayes_pls_golite062009 |
| protein binding | 0.035220363090062 | bayes_pls_golite062009 |
|
Region A: Residues: [172-333] |
1 11 21 31 41 51
| | | | | |
1 KDIRHEIPSF MTSLQAPPPP PPPPQNPRGN TDFSALSLLG TDSPTTHSVS TPSPTDSVCS 60
61 PSSSVASSAT PSTSSPVDES RQCRKRSLSP STTSSTTAPP PPPQPPTKKG MKPNPLNLTA 120
121 TSNFSLQPSI SSPLLMLQQH HQNSPLFQAQ ISQLYTYAAL AS
|
| Detection Method: | |
| Confidence: | 1.05 |
| Match: | 2j63A |
| Description: | No description for 2j63A was found. |
|
Region A: Residues: [334-441] |
1 11 21 31 41 51
| | | | | |
1 AGLYGPQISP HLASQSPFRS PLVTPKNLGL GELGSSGRTP GLGESQVFQF PPVSAFQATN 60
61 PLLNTFSNLI SPMAPFMMPP SQSSTSFKFP SSTDSLKTPT VPIKMPTL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
