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Protein Overview: gro-1

General Information:
Name(s) found: gro-1 / CE30119 [WormBase]
Description(s) found:
Found 20 descriptions.
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  • WBGene00001740 locus:gro-1 status:Confirmed UniProt:G5EBS1 protein_id:CCD66664.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 430 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEALink to PubMed article]
    Biological Process: tRNA processing [IEALink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: nucleotide binding [IEALink to PubMed article]
    nucleic acid binding [IEALink to PubMed article]
    ATP binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]
    tRNA isopentenyltransferase activity [IEALink to PubMed article]
    nucleoside-triphosphatase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFRKFLNFL KPYKMRTDPI IFVIGCTGTG KSDLGVAIAK KYGGEVISVD SMQFYKGLDI  60
   61 ATNKITEEES EGIQHHMMSF LNPSESSSYN VHSFREVTLD LIKKIRARSK IPVIVGGTTY 120
  121 YAESVLYENN LIETNTSDDV DSKSRTSSES SSEDTEEGIS NQELWDELKK IDEKSALLLH 180
  181 PNNRYRVQRA LQIFRETGIR KSELVEKQKS DETVDLGGRL RFDNSLVIFM DATPEVLEER 240
  241 LDGRVDKMIK LGLKNELIEF YNEHAEYINH SKYGVMQCIG LKEFVPWLNL DPSERDTLNG 300
  301 DKLFKQGCDD VKLHTRQYAR RQRRWYRSRL LKRSDGDRKM ASTKMLDTSD KYRIISDGMD 360
  361 IVDQWMNGID LFEDISTDTN PILKGSDANI LLNCEICNIS MTGKDNWQKH IDGKKHKHHA 420
  421 KQKKLAETRT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..360] PSI-BLAST 93.0 No description for 2qgnA was found.
    2 View Details [361..430] FFAS03 1.71 Solution Structure of a Human C2H2-type Zinc Finger Protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • nucleic acid binding
    		•  2.37910043444615 bayes_pls_golite062009
  • DNA binding
    		•  2.34410707831983 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.33505949768575 bayes_pls_golite062009
  • binding
    		•  2.15905417087312 bayes_pls_golite062009
  • transcription factor activity
    		•  1.47482918271021 bayes_pls_golite062009
  • protein binding
    		•  0.852654490075478 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.642848769534094 bayes_pls_golite062009
  • RNA binding
    		•  0.332063226840189 bayes_pls_golite062009
  • transcription activator activity
    		•  0.294719498389745 bayes_pls_golite062009
  • catalytic activity
    		•  0.263007611601737 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle