YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CE29189

General Information:
Name(s) found: CE29189 [WormBase]
Description(s) found:
Found 23 descriptions.
SHOW ALL
  • WBGene00016171 PCI domain-containing protein 2 homolog status:Confirmed UniProt:Q95QU0 protein_id:CCD65746.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 413 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    positive regulation of multicellular organism growth [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSVRSIEDY FGQIESLLYR QDWTNGEKIS KFVSTYDEHA QEPFMHIEAY GSRSKRCRVS  60
   61 EDEVFDEIVC LHLHVLYNIH VAQDLITAQS TQIQIIQLFN KEILQKRKDE NWFLPIFYRL 120
  121 CTDLRWLSKG AEACVSGDDE GDSNANSFFE SAAKAITECY RTCVSDVHAE EGTTKKVAML 180
  181 NMTNQLFQIY FQINKLNLLK PLIRAIDNCG SLYHDFLMSD KVAYNYFLGR KAMFDADLNL 240
  241 AEKSLLYAFR NCPADSMSNK RKILIYLIPV KMFLGHMPTS QLLHEYRLDE FQDVVAGVKD 300
  301 GNLAQLDGAL AANEAFFIKC GIFLMLEKLR MITFRTLFKK VSQIVGTAQI PLDAFQTALR 360
  361 FVGVTDVDMD ELECIIANLI ASKKIKGYLS HQHQKLVISK MNAFPTLSGV SSN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..142] MSA 2.24899 View MSA. No confident structure predictions are available.
    2 View Details [143..335] MSA 3.296986 View MSA. No confident structure predictions are available.
    3 View Details [336..413] PSI-BLAST 6.69897 Solution structure of the PCI domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  2.69037212939381 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.56741881949907 bayes_pls_golite062009
  • DNA binding
    		•  2.34112599257549 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.25591323571311 bayes_pls_golite062009
  • transcription factor activity
    		•  1.72207203404871 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.1745827861852 bayes_pls_golite062009
  • transcription activator activity
    		•  1.07652525986046 bayes_pls_golite062009
  • protein binding
    		•  0.653872239015235 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.181273085438029 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle