Protein Overview: CE29126

General Information:
Name(s) found:	CE29126 [WormBase]
Description(s) found: Found 17 descriptions. SHOW ALL	WBGene00021921 status:Partially_confirmed UniProt:Q9N368 protein_id:CCD74059.1 [WormBase]
Organism:	Caenorhabditis elegans
Length:	580 amino acids
Gene Ontology:
Cellular Component:	nucleus [IEA]
Biological Process:	locomotory behavior [IMP] hermaphrodite genitalia development [IMP] morphogenesis of an epithelium [IMP] positive regulation of growth rate [IMP] gamete generation [IMP] mRNA processing [IEA]
Molecular Function:	nucleic acid binding [IEA] RNA binding [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDGSMDIDA MLEGGLEMAK NDRSQSRQRS PARSNRSRSR SKDRKSSSRR SRSRSRDRRG  60
   61 DRGDRRRSRS RSKDRRTTRR RSPSRERRRS RSRDRGAPRR RSRTRSRDRR RSPPRRRDRR 120
  121 TPPRRSPGRR SPPRSRLPGP ERRDVMPFNP RHSPPKNAKL ELTAEERDQR TLLIMQIARD 180
  181 TRPRDLEEFF SAVGAVRDVR IITDSRTGRS KGICYVEFWD EESVPLGLAL NGQRLMGAPL 240
  241 QIQRTCAERN RAANSSVAST LGFVAPGNKG PTHVLVENLH PKIDEKMIRD IFESFGRIEK 300
  301 IDLEVDSNRE NRGFATITFR NADDAQKSCE QLNNFELAGR CIRLSIKQES QAPAVKKEEA 360
  361 SIHQRSLDDV GDRQGFSLGA GGRQQLMAKL AQGTGSGMEL TASAQMAAQH AGHSQIPSIA 420
  421 TQCFLLSNMF DPSKETEPAW DHDIREDVIE QCLAHGGALH VFVDKGSEQG NVYVKCPSIV 480
  481 IAHQAVSALH GRWFSGKVIT ANYVPVNSYH DLFPDAVHAR IVLTTRGAAP VVPIVPMVPV 540
  541 VPPQGIANGY GAYGMMAPAH GAPPPPPPQQ QGQYGGYGRY

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	hcp-2	hcp2 ip from december	Cheeseman, I.M., et al. (2005)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..160]	MSA	5.461995	View MSA. No confident structure predictions are available.
2	View Details	[161..366]	PSI-BLAST	42.221849	Poly(A)-binding protein
3	View Details	[367..580]	PSI-BLAST	5.69897	No description for 2ditA was found.

Functions predicted (by domain):

#

Gene Ontology predictions

1

No functions predicted.

2

Term	Confidence	Notes
RNA binding	6.73097473547076	bayes_pls_golite062009
	6.62953239642182	bayes_pls_golite062009
mRNA binding	5.29759606920196	bayes_pls_golite062009
nucleic acid binding	4.92126426323641	bayes_pls_golite062009
binding	3.64400841800969	bayes_pls_golite062009
snRNA binding	3.28448936696877	bayes_pls_golite062009
poly-pyrimidine tract binding	3.11990160533699	bayes_pls_golite062009
single-stranded RNA binding	2.93798024346416	bayes_pls_golite062009
U1 snRNA binding	2.26303528058407	bayes_pls_golite062009
transcription regulator activity	1.92450390013691	bayes_pls_golite062009
DNA binding	1.8021593476478	bayes_pls_golite062009
structural molecule activity	1.29928829870122	bayes_pls_golite062009
transcription factor activity	1.15127506309683	bayes_pls_golite062009
protein binding	1.12215421354121	bayes_pls_golite062009
mRNA 3'-UTR binding	0.591700155096213	bayes_pls_golite062009
sequence-specific DNA binding	0.383589644462932	bayes_pls_golite062009

3

Term	Confidence	Notes
RNA binding	6.73097473547076	bayes_pls_golite062009
	6.62953239642182	bayes_pls_golite062009
mRNA binding	5.29759606920196	bayes_pls_golite062009
nucleic acid binding	4.92126426323641	bayes_pls_golite062009
binding	3.64400841800969	bayes_pls_golite062009
snRNA binding	3.28448936696877	bayes_pls_golite062009
poly-pyrimidine tract binding	3.11990160533699	bayes_pls_golite062009
single-stranded RNA binding	2.93798024346416	bayes_pls_golite062009
U1 snRNA binding	2.26303528058407	bayes_pls_golite062009
transcription regulator activity	1.92450390013691	bayes_pls_golite062009
DNA binding	1.8021593476478	bayes_pls_golite062009
structural molecule activity	1.29928829870122	bayes_pls_golite062009
transcription factor activity	1.15127506309683	bayes_pls_golite062009
protein binding	1.12215421354121	bayes_pls_golite062009
mRNA 3'-UTR binding	0.591700155096213	bayes_pls_golite062009
sequence-specific DNA binding	0.383589644462932	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.98

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle