| Protein: | CE29126 |
| Organism: | Caenorhabditis elegans |
| Length: | 580 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29126.
| Description | E-value | Query Range |
Subject Range |
|
|
290.0 | [0..77] | [578..4] |
|
Region A: Residues: [1-160] |
1 11 21 31 41 51
| | | | | |
1 MTDGSMDIDA MLEGGLEMAK NDRSQSRQRS PARSNRSRSR SKDRKSSSRR SRSRSRDRRG 60
61 DRGDRRRSRS RSKDRRTTRR RSPSRERRRS RSRDRGAPRR RSRTRSRDRR RSPPRRRDRR 120
121 TPPRRSPGRR SPPRSRLPGP ERRDVMPFNP RHSPPKNAKL
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [161-366] |
1 11 21 31 41 51
| | | | | |
1 ELTAEERDQR TLLIMQIARD TRPRDLEEFF SAVGAVRDVR IITDSRTGRS KGICYVEFWD 60
61 EESVPLGLAL NGQRLMGAPL QIQRTCAERN RAANSSVAST LGFVAPGNKG PTHVLVENLH 120
121 PKIDEKMIRD IFESFGRIEK IDLEVDSNRE NRGFATITFR NADDAQKSCE QLNNFELAGR 180
181 CIRLSIKQES QAPAVKKEEA SIHQRS
|
| Detection Method: | |
| Confidence: | 42.221849 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| snRNA binding | 3.28448936696877 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.26303528058407 | bayes_pls_golite062009 |
| transcription regulator activity | 1.92450390013691 | bayes_pls_golite062009 |
| DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription factor activity | 1.15127506309683 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
|
Region A: Residues: [367-580] |
1 11 21 31 41 51
| | | | | |
1 LDDVGDRQGF SLGAGGRQQL MAKLAQGTGS GMELTASAQM AAQHAGHSQI PSIATQCFLL 60
61 SNMFDPSKET EPAWDHDIRE DVIEQCLAHG GALHVFVDKG SEQGNVYVKC PSIVIAHQAV 120
121 SALHGRWFSG KVITANYVPV NSYHDLFPDA VHARIVLTTR GAAPVVPIVP MVPVVPPQGI 180
181 ANGYGAYGMM APAHGAPPPP PPQQQGQYGG YGRY
|
| Detection Method: | |
| Confidence: | 5.69897 |
| Match: | 2ditA |
| Description: | No description for 2ditA was found. |
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| snRNA binding | 3.28448936696877 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.26303528058407 | bayes_pls_golite062009 |
| transcription regulator activity | 1.92450390013691 | bayes_pls_golite062009 |
| DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription factor activity | 1.15127506309683 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
