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Protein Overview: ooc-5

General Information:
Name(s) found: ooc-5 / CE28284 [WormBase]
Description(s) found:
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  • WBGene00003870 locus:ooc-5 Torsin-like protein status:Partially_confirmed UniProt:Q95NU5 protein_id:CAC44294.1 [WormBase]
  • gi|27923866|sp|Q95NU5.1|TORS_CAEEL RecName: Full=Torsin-like protein; AltName: Full=Abnormal oocyte formation protein 5; Flags: Precursor [NCBI NR]
  • gi|17535351|ref|NP_495916.1| abnormal OOCyte formation family member (ooc-5) [Caenorhabditis elegans] [NCBI NR]
  • gi|14787713|emb|CAC44294.1| C. elegans protein C18E9.11b, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|14787710|emb|CAC44292.1| C. elegans protein C18E9.11b, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • Torsin-like protein OS=Caenorhabditis elegans GN=ooc-5 PE=1 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE28284 WBGene00003870 locus:ooc-5 status:Partially_confirmed SW:Q95NU5 protein_id:CAC44292.1 [wormpep150.fasta]
  • 28284 WBGene00003870 locus:ooc-5 status:Predicted SW:Q95NU5 protein_id:CAC44292.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • torsin A precursor family member, abnormal OOCyte formation OOC-5 (ooc-5) [Caenorhabditis elegans]gi|14787713|emb|CAC44294.1| Hypothetical protein C18E9.11b [Caenorhabditis elegans]gi|14787710|emb|CAC44292.1| Hypothetical protein C18E9.11b [Caenorhabdit [nrdb_11152004_Chlamydomonas]
  • CE28284 WBGene00003870 locus:ooc-5 status:Predicted SW:Q95NU5 protein_id:CAC44292.1 [wormpep132.fasta]
  • 28284 WBGene00003870 locus:ooc-5 status:Partially_confirmed SW:Q95NU5 protein_id:CAC44292.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • locus:ooc-5 status:Predicted SW:Q95NU5 protein_id:CAC44292.1 [wormpep115.fasta.reversed]
  • CE28284 status:Predicted TR:Q95NU5 protein_id:CAC44292.1 [wormpep80.hongbin]
  • CE28284 WBGene00003870 locus:ooc-5 status:Partially_confirmed UniProt:TORS_CAEEL protein_id:CAC44294.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE28284 WBGene00003870 locus:ooc-5 status:Partially_confirmed UniProt:TORS_CAEEL protein_id:CAC44294.1| [wormORF-contam.fasta]
  • Torsin-like protein precursor (Abnormal oocyte formation protein 5) [nr-271106-contam.fasta]
  • Hypothetical protein C18E9.11b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • abnormal OOCyte formation family member (ooc-5) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE28284 WBGene00003870 locus:ooc-5 status:Partially_confirmed UniProt:Q95NU5 protein_id:CAC44294.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE28284 WBGene00003870 locus:ooc-5 status:Partially_confirmed UniProt:Q95NU5 protein_id:CAC44294.1 Torsin-like protein [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 356 amino acids

    Gene Ontology:
    Cellular Component: spindle pole [IDALink to PubMed article]
    endoplasmic reticulum [IDALink to PubMed article][IEALink to PubMed article]
    Biological Process: chaperone mediated protein folding requiring cofactor [IEALink to PubMed article]
    Molecular Function: nucleotide binding [IEALink to PubMed article]
    ATP binding [IEALink to PubMed article]
    nucleoside-triphosphatase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLDYVLLLL FHLCFVNTEL ISVITGKIKD SGTTIAISAG AFWGLKDRLK CYLYECCHEP  60
   61 DVNFNYHTLD ADIANLLFGQ HLVKDVVVNS IKSHWYNENP RKPLVLSFHG YTGSGKNYVA 120
  121 EIIANNTFRL GLRSTFVQHI VATNDFPDKN KLEEYQVELR NRILTTVQKC QRSIFIFDEA 180
  181 DKLPEQLLGA IKPFLDYYST ISGVDFRRSI FILLSNKGGG EIARITKEQY ESGYPREQLR 240
  241 LEAFERELMN FSYNEKGGLQ MSELISNHLI DHFVPFLPLQ REHVRSCVGA YLRKRGRGDL 300
  301 VSNVDFVERV LNSLQYFPES SKAFSSSGCK RVDAKTDLEM AKIRPLLSSV HFDDEL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..356] PSI-BLAST 54.522879 Crystal Structure Analysis of ClpB

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.05253348982328 bayes_pls_golite062009
  • hydrolase activity
    		•  1.1574342089649 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.948012599424412 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.946775815096981 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.943793957809966 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.923981227281218 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.901460716954519 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.569910969126728 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.568840867400671 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.568779924702229 bayes_pls_golite062009
  • nucleotide binding
    		•  0.564275755355315 bayes_pls_golite062009
  • microtubule motor activity
    		•  0.489468237062011 bayes_pls_golite062009
  • DNA binding
    		•  0.341209040153805 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.208665086324262 bayes_pls_golite062009
  • ATP binding
    		•  0.1860481660648 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.152859582615242 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.138615225841109 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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