YRC Public Data Repository - Protein Structure Prediction

Protein:	ooc-5
Organism:	Caenorhabditis elegans
Length:	356 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ooc-5.

Description	E-value	Query Range	Subject Range
CLPB_SALTY - Chaperone protein ClpB OS=Salmonella typhimurium GN=clpB PE=3 SV=1 CLPB_SALTY - Chaperone protein clpB OS=Salmonella typhimurium GN=clpB PE=3 SV=1 CLPB_SALTI - Chaperone protein clpB OS=Salmonella typhi GN=clpB PE=3 SV=1 gi\|213850142 - gi\|213850142\|ref\|ZP_03381040.1\| protein disaggregation chaperone [Salmonella enterica subsp. enteric... gi\|213999720 - gi\|213999720\|ref\|ZP_03410455.1\| protein disaggregation chaperone [Salmonella enterica subsp. enteric... gi\|194448814, gi... - gi\|194448814\|ref\|YP_002046666.1\| protein disaggregation chaperone [Salmonella enterica subsp. enteri... gi\|197244024, gi... - gi\|197265769\|ref\|ZP_03165843.1\| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp. ent... gi\|213051813 - gi\|213051813\|ref\|ZP_03344691.1\| protein disaggregation chaperone [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=clpB] [protein=protein disaggregation chaperone] [protein_id=YP_005238782.1] [location=complem... gi\|213649749 - gi\|213649749\|ref\|ZP_03379802.1\| protein disaggregation chaperone [Salmonella enterica subsp. enteric... gi\|29142985, gi\|... - gi\|29142985\|ref\|NP_806327.1\| protein disaggregation chaperone [Salmonella enterica subsp. enterica s... gi\|16761514 - gi\|16761514\|ref\|NP_457131.1\| protein disaggregation chaperone [Salmonella enterica subsp. enterica s... CLPB_SALTI - Chaperone protein ClpB OS=Salmonella typhi GN=clpB PE=3 SV=1 gi\|205329269, gi... - gi\|205329269\|gb\|EDZ16033.1\| chaperone protein clpB [Salmonella enterica subsp. enterica serovar 4,[5... CLPB_SALTY - Chaperone protein ClpB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=clpB PE=3 ... gi\|168244680, gi... - gi\|205336469\|gb\|EDZ23233.1\| chaperone protein clpB [Salmonella enterica subsp. enterica serovar Heid...	236.0	[0..14]	[352..525]

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Predicted Domain #1

Region A:
Residues: [1-356]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLDYVLLLL FHLCFVNTEL ISVITGKIKD SGTTIAISAG AFWGLKDRLK CYLYECCHEP  60
   61 DVNFNYHTLD ADIANLLFGQ HLVKDVVVNS IKSHWYNENP RKPLVLSFHG YTGSGKNYVA 120
  121 EIIANNTFRL GLRSTFVQHI VATNDFPDKN KLEEYQVELR NRILTTVQKC QRSIFIFDEA 180
  181 DKLPEQLLGA IKPFLDYYST ISGVDFRRSI FILLSNKGGG EIARITKEQY ESGYPREQLR 240
  241 LEAFERELMN FSYNEKGGLQ MSELISNHLI DHFVPFLPLQ REHVRSCVGA YLRKRGRGDL 300
  301 VSNVDFVERV LNSLQYFPES SKAFSSSGCK RVDAKTDLEM AKIRPLLSSV HFDDEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.522879
Match:	1qvrA
Description:	Crystal Structure Analysis of ClpB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.05253348982328	bayes_pls_golite062009
hydrolase activity	1.1574342089649	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.948012599424412	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.946775815096981	bayes_pls_golite062009
pyrophosphatase activity	0.943793957809966	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.923981227281218	bayes_pls_golite062009
nucleic acid binding	0.901460716954519	bayes_pls_golite062009
purine nucleotide binding	0.569910969126728	bayes_pls_golite062009
purine ribonucleotide binding	0.568840867400671	bayes_pls_golite062009
ribonucleotide binding	0.568779924702229	bayes_pls_golite062009
nucleotide binding	0.564275755355315	bayes_pls_golite062009
microtubule motor activity	0.489468237062011	bayes_pls_golite062009
DNA binding	0.341209040153805	bayes_pls_golite062009
structural constituent of ribosome	0.208665086324262	bayes_pls_golite062009
ATP binding	0.1860481660648	bayes_pls_golite062009
adenyl ribonucleotide binding	0.152859582615242	bayes_pls_golite062009
adenyl nucleotide binding	0.138615225841109	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: