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Protein Overview: vab-3

General Information:
Name(s) found: vab-3 / CE28216 [WormBase]
Description(s) found:
Found 17 descriptions.
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  • WBGene00006870 locus:vab-3 status:Confirmed UniProt:Q95ZV2 protein_id:CAC42287.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 269 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][IEALink to PubMed article]
    Biological Process: multicellular organismal development [IEALink to PubMed article]
    cell fate commitment [IMPLink to PubMed article]
    anterior/posterior pattern formation [IMPLink to PubMed article]
    regulation of transcription, DNA-dependent [IEALink to PubMed article][ISSLink to PubMed article]
    tail tip morphogenesis [IMPLink to PubMed articleLink to PubMed article]
    regulation of cell adhesion [IMPLink to PubMed article]
    positive regulation of transcription from RNA polymerase II promoter [IMPLink to PubMed article]
    Molecular Function: transcription factor activity [IEALink to PubMed article][ISSLink to PubMed article]
    sequence-specific DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSIANTNED QKPPTEPEDD AAARMRLKRK LQRNRTSFTQ VQIESLEKEF ERTHYPDVFA  60
   61 RERLAQKIQL PEARIQVWFS NRRAKWRREE KMRNKRSSGT MDSSLSNGTP TPTPGSVTGS 120
  121 NMTNPIGSPA STPNRFPSNN SANLPTTNFV PQTSQMYAGL SQPAMDPYSF GIANGFSMAP 180
  181 YPQVTDFQPH HMFQGRSPYD FPYPRMPTNG HGFQQSMSPA TTAVGDIPTL SSGMSLPVSA 240
  241 VLNSIDPSLT HSQMHELSDL TQEHYWRPQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..97] PSI-BLAST 22.39794 Paired protein
    2 View Details [98..269] MSA 3.637996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle