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Protein Overview: tra-1

General Information:
Name(s) found: tra-1 / CE28130 [WormBase]
Description(s) found:
Found 15 descriptions.
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  • WBGene00006604 locus:tra-1 Sex-determining transformer protein 1 status:Confirmed UniProt:P34708 protein_id:CAC42377.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 287 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed articleLink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    intracellular [IEALink to PubMed article]
    Biological Process: hermaphrodite genitalia development [IMPLink to PubMed article]
    morphogenesis of an epithelium [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    female somatic sex determination [IMPLink to PubMed articleLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    positive regulation of neuron apoptosis [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    DNA binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]
    sequence-specific DNA binding [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPSTEDPDT VVEAQRRGSF SKKKNANGWN KVELVDQCAK QMGSEDKQPG GGDVKTENDP  60
   61 SKNGLGSATS NFIQSSVPPS HQTLSNPLQL SPPAEASVAQ QSGASQVFPT FQAALGASSD 120
  121 ELLQPNATSS STSSSASTSS IVPVVKFTNQ TAPNGSTVAT SVGQNVRLTI NGKRVGRPPG 180
  181 TFKRPQNNAA NSSNSGNDSD MMGDHDLTCR WKSCNSSFQT LKALVDHVQE SHVQSTEQEH 240
  241 HAWRCEWEGC DRNETFKALY MLIVHVRRHT GEKPNKCEVG FGGDNEI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..96] PSI-BLAST 6.221849 Solution structures of the C2H2 type zinc finger domain of human Transcriptional repressor CTCF
    2 View Details [97..287] PSI-BLAST 56.0 No description for 2i13A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.414217765611205 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle