| Protein: | tra-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 287 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tra-1.
| Description | E-value | Query Range |
Subject Range |
|
|
446.0 | [0..3] | [286..2570] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MAPSTEDPDT VVEAQRRGSF SKKKNANGWN KVELVDQCAK QMGSEDKQPG GGDVKTENDP 60
61 SKNGLGSATS NFIQSSVPPS HQTLSNPLQL SPPAEA
|
| Detection Method: |  |
| Confidence: | 6.221849 |
| Match: | 1x6hA |
| Description: | Solution structures of the C2H2 type zinc finger domain of human Transcriptional repressor CTCF |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.414217765611205 | bayes_pls_golite062009 |
|
Region A: Residues: [97-287] |
1 11 21 31 41 51
| | | | | |
1 SVAQQSGASQ VFPTFQAALG ASSDELLQPN ATSSSTSSSA STSSIVPVVK FTNQTAPNGS 60
61 TVATSVGQNV RLTINGKRVG RPPGTFKRPQ NNAANSSNSG NDSDMMGDHD LTCRWKSCNS 120
121 SFQTLKALVD HVQESHVQST EQEHHAWRCE WEGCDRNETF KALYMLIVHV RRHTGEKPNK 180
181 CEVGFGGDNE I
|
| Detection Method: | |
| Confidence: | 56.0 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
