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Protein Overview: fog-1

General Information:
Name(s) found: fog-1 / CE27480 [WormBase]
Description(s) found:
Found 22 descriptions.
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  • WBGene00001481 locus:fog-1 status:Confirmed UniProt:G5EBS6 protein_id:CCD72822.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 619 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    intracellular [IEALink to PubMed article]
    Biological Process: spermatogenesis [IMPLink to PubMed article]
    germline cell cycle switching, mitotic to meiotic cell cycle [IMPLink to PubMed article]
    regulation of meiosis [IMPLink to PubMed article]
    germ-line sex determination [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    masculinization of hermaphrodite soma [IMPLink to PubMed article]
    masculinization of hermaphroditic germ-line [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]
    mRNA 3'-UTR binding [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPSGHNEKW TRGYQRENSL LHHDDEFRSF QRRTDCPQHF YQQTNGYEHS LFGEKAGFHE  60
   61 ASAQNLLMHL ASQISPMEFA KLQLELLASQ NKQRPHRGAG FGSYLMSPPA TVSSSRSTVL 120
  121 CCNPAPPYAS HCQSPAASDD FGHHFGSFDS MSAYNFHNNN QQQRREAHVS RDGKSFDQGN 180
  181 IYTAEDVHTV VKNHRNENNQ RVVSNKVFVG GISHMMNRKI INKFFGQFGT VFVDWPVKQK 240
  241 PNSRGKSIAI GSYSYLFLVY SDEQSVIKLM SACHRNSQND FFVSVPGFRD MIQIRPWFIY 300
  301 NGFYILEKAR HNRIIDIHRT VFLGGLPRIV TAEEIAQMFS EFGVVLLVTI DIDQDYGYPK 360
  361 GAARVTFERD SAFNRALEKK FLKFDNIDSS KTMIEIKPYV MEDVGCDECG GLWFNPFLSI 420
  421 YDHLKCAKDD HQKEQKMAEI KNFNMWSSRS PFSLNSGDGH DDLITKMDAG FKKNCNLACT 480
  481 YSNRENEKNE TEMGARKFLE MVKSFGLEKE KTVTVNGNEY PIGPDLWDKF LPAPKYDVGT 540
  541 EPVRMNPEAK LQQFLRMKRT NVYSNKSAYC KEAPCRQYYC PSCSNKLHSG PNQHTLLPAG 600
  601 KPERRPRKDK NMYLVNMGK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..100] deduced N/A No confident structure predictions are available.
    2 View Details [101..409] PSI-BLAST 21.39794 No description for 2ghpA was found.
    3 View Details [410..522] PSI-BLAST 12.69897 Nucleolin
    4 View Details [523..619] PSI-BLAST 18.522879 No description for 2d9pA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • nucleic acid binding
    		•  2.9003829560934 bayes_pls_golite062009
  • binding
    		•  2.30438455421982 bayes_pls_golite062009
  • mRNA binding
    		•  1.89927882528439 bayes_pls_golite062009
  • RNA binding
    		•  1.53089788753207 bayes_pls_golite062009
  • protein binding
    		•  0.403675976995418 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.214300208089751 bayes_pls_golite062009
    3
    Term Confidence Notes
  • nucleic acid binding
    		•  2.9003829560934 bayes_pls_golite062009
  • binding
    		•  2.30438455421982 bayes_pls_golite062009
  • mRNA binding
    		•  1.89927882528439 bayes_pls_golite062009
  • RNA binding
    		•  1.53089788753207 bayes_pls_golite062009
  • protein binding
    		•  0.403675976995418 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.214300208089751 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle