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Protein Overview: ttb-1

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..70] FFAS03 3.1 RDC-derived models of the zinc ribbon domain of human general transcription TFIIB (zinc bound structures)
2 View Details [71..306] PSI-BLAST 39.69897 Transcription factor IIB (TFIIB), core domain

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • general RNA polymerase II transcription factor activity
  • 5.56373197054355 bayes_pls_golite062009
  • transcription elongation regulator activity
  • 4.94644536450092 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
  • 4.00205139503916 bayes_pls_golite062009
  • RNA polymerase activity
  • 4.00205139503916 bayes_pls_golite062009
  • transcription regulator activity
  • 3.26689775782701 bayes_pls_golite062009
  • nucleic acid binding
  • 2.22680674586367 bayes_pls_golite062009
  • binding
  • 2.0546846758949 bayes_pls_golite062009
  • DNA binding
  • 2.01468878668039 bayes_pls_golite062009
  • positive transcription elongation factor activity
  • 1.49227692053981 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 1.48570514124545 bayes_pls_golite062009
  • nucleotidyltransferase activity
  • 1.10975425818967 bayes_pls_golite062009
  • protein binding
  • 0.549662583711205 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
  • 0.536637459961958 bayes_pls_golite062009
  • DNA primase activity
  • 0.494157804587957 bayes_pls_golite062009
  • catalytic activity
  • 0.433059249914853 bayes_pls_golite062009
  • RNA polymerase II transcription elongation factor activity
  • 0.0384907163875292 bayes_pls_golite062009
    2
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
  • 6.34389570239956 bayes_pls_golite062009
  • cyclin-dependent protein kinase regulator activity
  • 3.19553060844126 bayes_pls_golite062009
  • protein kinase regulator activity
  • 2.87088741581791 bayes_pls_golite062009
  • transcription regulator activity
  • 2.795846725429 bayes_pls_golite062009
  • binding
  • 2.4204867358489 bayes_pls_golite062009
  • nucleic acid binding
  • 2.04886889839181 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 2.00665312545368 bayes_pls_golite062009
  • DNA binding
  • 1.94297811210385 bayes_pls_golite062009
  • transcription elongation regulator activity
  • 1.69439693414478 bayes_pls_golite062009
  • kinase regulator activity
  • 1.65109787211976 bayes_pls_golite062009
  • protein binding
  • 1.47106731485576 bayes_pls_golite062009
  • transcription factor activity
  • 1.21921365719206 bayes_pls_golite062009
  • transcription factor binding
  • 0.749278791251235 bayes_pls_golite062009
  • enzyme regulator activity
  • 0.729629809946521 bayes_pls_golite062009
  • positive transcription elongation factor activity
  • 0.42590121577004 bayes_pls_golite062009
  • transcription coactivator activity
  • 0.138191616709499 bayes_pls_golite062009
  • transcription activator activity
  • 0.0696060248241566 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle