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Protein Overview: CE26813

General Information:
Name(s) found: CE26813 [WormBase]
Description(s) found:
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  • WBGene00010054 status:Confirmed UniProt:G5EG47 protein_id:CAA91336.2 [WormBase]
  • gi|17534359|ref|NP_496466.1| hypothetical protein F54D5.11 [Caenorhabditis elegans] [NCBI NR]
  • gi|1638825|emb|CAA70049.1| TFIIE-beta protein [Caenorhabditis elegans] [NCBI NR]
  • gi|13548367|emb|CAA91336.2| C. elegans protein F54D5.11, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE26813 WBGene00010054 transcription intiation factor TFIIE-BETA status:Partially_confirmed TR:Q20776 protein_id:CAA91336.2 [wormpep150.fasta]
  • 26813 WBGene00010054 transcription intiation factor TFIIE-BETA status:Partially_confirmed TR:Q20776 protein_id:CAA91336.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • transcription initiation factor TFIIE, beta subunit (33.0 kD) (2L832) [Caenorhabditis elegans]gi|13548367|emb|CAA91336.2| Hypothetical protein F54D5.11 [Caenorhabditis elegans]gi|1638825|emb|CAA70049.1| TFIIE-beta protein [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • transcription intiation factor TFIIE-BETA status:Partially_confirmed TR:Q20776 protein_id:CAA91336.2 [wormpep115.fasta.reversed]
  • CE26813 transcription intiation factor TFIIE-BETA status:Partially_confirmed TR:Q20776 protein_id:CAA91336.2 [wormpep80.hongbin]
  • CE26813 WBGene00010054 transcription intiation factor TFIIE-BETA status:Confirmed UniProt:Q20776_CAEEL protein_id:CAA91336.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE26813 WBGene00010054 transcription intiation factor TFIIE-BETA status:Confirmed UniProt:Q20776_CAEEL protein_id:CAA91336.2| [wormORF-contam.fasta]
  • TFIIE-beta protein [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein F54D5.11 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • F54D5.11 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE26813 WBGene00010054 transcription intiation factor TFIIE-BETA status:Confirmed TR:Q20776 protein_id:CAA91336.2 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE26813 WBGene00010054 transcription intiation factor TFIIE-BETA status:Confirmed UniProt:Q20776 protein_id:CAA91336.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE26813 WBGene00010054 transcription intiation factor TFIIE-BETA status:Confirmed UniProt:G5EG47 protein_id:CAA91336.2 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE26813 WBGene00010054 status:Confirmed UniProt:G5EG47 protein_id:CAA91336.2 [wormpep246-ecoli-contam.fasta]
  • CE26813 WBGene00010054 status:Confirmed UniProt:G5EG47 protein_id:CAA91336.2 Transcription initiation factor IIE subunit beta [c_elegans-PRJNA13758-WS250-ecoli-contam.fasta]
  • Transcription initiation factor IIE subunit beta OS=Caenorhabditis elegans GN=TFIIE-beta PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 289 amino acids

    Gene Ontology:
    Cellular Component: transcription factor TFIIE complex [IEALink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed articleLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    transcription initiation from RNA polymerase II promoter [IEALink to PubMed article]
    positive regulation of multicellular organism growth [IMPLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: RNA polymerase II transcription factor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPELLRQRT AFQKHAATTM AVQNKPTTAP NSHTTYSSEA AKAKKKKSSG PAQNLSKLPD  60
   61 FNNSVSNANA LSNATNFSTM AKIVDYMKKR HLNNQQWPLT LQEILDELQI FDLSKRSLAF 120
  121 LQEALPNNPR LIMESEKFAF RPPYKIKGKT SLVAVARKHY QDGKGGILVS DLAECVANYD 180
  181 ALLQQVSSEV IVVPTQVNKK KDRVVFYNDK EFTFPELEDD FKALWRHVSV DHLDEKKIEE 240
  241 YLQKKGLDAM KDLTPKVRMQ APLKRKAAKR RFNQKVQNEH MDGVLEDYE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..158] PSI-BLAST 27.154902 The central core domain of TFIIE beta
    2 View Details [159..289] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  5.67074370996647 bayes_pls_golite062009
  • transcription regulator activity
    		•  5.55329976718261 bayes_pls_golite062009
  • DNA binding
    		•  4.84466441605416 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.57954522145536 bayes_pls_golite062009
  • transcription factor activity
    		•  4.12685284895733 bayes_pls_golite062009
  • binding
    		•  3.33026160538031 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.60738445921725 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.3918869755162 bayes_pls_golite062009
  • transcription activator activity
    		•  2.37668609508629 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.22485867684613 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  1.82365519759474 bayes_pls_golite062009
  • RNA polymerase activity
    		•  1.82365519759474 bayes_pls_golite062009
  • transcription elongation regulator activity
    		•  1.81270943531115 bayes_pls_golite062009
  • transcription factor binding
    		•  0.85714789329232 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.66743181561551 bayes_pls_golite062009
  • protein binding
    		•  0.653872239015235 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.237727660028553 bayes_pls_golite062009
  • positive transcription elongation factor activity
    		•  0.13524243942225 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity, enhancer binding
    		•  0.0360186926687502 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle