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Protein Overview: smg-7

General Information:
Name(s) found: smg-7 / CE25584 [WormBase]
Description(s) found:
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  • WBGene00004885 locus:smg-7 status:Confirmed UniProt:G5EF47 protein_id:CCD62342.1 [WormBase]
  • gi|7105650|gb|AAF36043.1| Suppressor with morphological effect on genitalia protein 7, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|4140640|gb|AAD04156.1| SMG-7 [Caenorhabditis elegans] [NCBI NR]
  • gi|17542046|ref|NP_501033.1| Suppressor with Morphological effect on Genitalia family member (smg-7) [Caenorhabditis elegans] [NCBI NR]
  • pir||T43643 smg-7 protein - Caenorhabditis elegans [NCBI NR]
  • [wormpep67.fasta]
  • CE25584 WBGene00004885 locus:smg-7 status:Confirmed TR:Q9Y053 protein_id:AAF36043.1 [wormpep150.fasta]
  • 25584 WBGene00004885 locus:smg-7 status:Confirmed TR:Q9Y053 protein_id:AAF36043.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • suppressor with Morphological effect on Genitalia SMG-7, nonsense-mediated mRNA decay protein (53.0 kD) (smg-7) [Caenorhabditis elegans]gi|7105650|gb|AAF36043.1| Suppressor with morphological effect on genitalia protein 7 [Caenorhabditis elegans]gi|4140 [nrdb_11152004_Chlamydomonas]
  • locus:smg-7 status:Confirmed TR:Q9Y053 protein_id:AAF36043.1 [wormpep115.fasta.reversed]
  • CE25584 locus:smg-7 status:Confirmed [wormpep80.hongbin]
  • CE25584 WBGene00004885 locus:smg-7 status:Confirmed UniProt:Q9Y053_CAEEL protein_id:AAF36043.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE25584 WBGene00004885 locus:smg-7 status:Confirmed UniProt:Q9Y053_CAEEL protein_id:AAF36043.1| [wormORF-contam.fasta]
  • Suppressor with Morphological effect on Genitalia family member (smg-7) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Suppressor with morphological effect on genitalia protein 7 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • SMG-7 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE25584 WBGene00004885 locus:smg-7 status:Confirmed UniProt:Q9Y053 protein_id:AAF36043.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • CE25584 WBGene00004885 locus:smg-7 status:Confirmed UniProt:G5EF47 protein_id:CCD62342.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • SMG-7 OS=Caenorhabditis elegans GN=smg-7 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 458 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    Biological Process: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [IGILink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEWEQLTV ELRKIPRGTE AAPQYLRHLM KMFVADFETA VSKRFDVKFW NKLKSMMDEI  60
   61 TKAMENDRLV NHNVQNLAIG FLTDLSLLVH YHYEIPNYGN DISKQLTWTP DVFLNRKPIK 120
  121 SKKNSRVFMA YVLLRMGDLM RYKENYPKAQ EYYEQSCRIN PADGAVWNQL GLISSLGAKN 180
  181 LESVYFHTRA LHATMEFPTA SGGLTNIFKN FANRDISRPM PIKDLYLSCL GRIHFLLEIE 240
  241 DSSVHLQKIG EEAATSKEMI VPLMSVYKHL EDGTELEQRA VEYVKTIWCT AYRSLLKTLD 300
  301 DYKEESKKLA DVPHLLHILA LLLCAPKLLR GIEDQTEDEV TSICEWLLCA NCDEKIKDSD 360
  361 AFGYFHCLQR IQYPLTRTQL AQKLVEIEDE DESKDSDQST IPEEDQKSLS TDTSRIQNED 420
  421 SEPESESESS DEEVLQRGRR RGRNPNLDES VETDEDEF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..458] PSI-BLAST 42.39794 Crystal structure of the N-terminal domain of human SMG7

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.787280988128024 bayes_pls_golite062009
  • protein binding
    		•  0.212989569759479 bayes_pls_golite062009
  • hydrolase activity
    		•  0.142615944899055 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle