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Protein Overview: smg-5

General Information:
Name(s) found: smg-5 / CE25134 [WormBase]
Description(s) found:
Found 20 descriptions.
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  • WBGene00004883 locus:smg-5 status:Confirmed UniProt:G5ECF1 protein_id:CCD68991.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 549 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    Biological Process: embryonic genitalia morphogenesis [IMPLink to PubMed article]
    nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [IGILink to PubMed article]
    RNA interference [IMPLink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]
    DEAD/H-box RNA helicase binding [IPILink to PubMed article]
    ribonuclease activity [ISSLink to PubMed article]
    protein phosphatase type 2A regulator activity [NASLink to PubMed article]
    protein phosphatase 2A binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKSDEVTEK FKRYCNQLEK YGQTENVHSP VMAMLRRKGR KQLIEIMKRD GDCTSSINKL  60
   61 WIVGYYHPFQ FFIRDKEKNM AIAVLLTMFC GELQEMLSLP DDKYPALWNM YIGDFHRYMP 120
  121 DEEIQKCLAV GYYSRAIDLD PNQGRAFHVL AGLRADLNVA QKLRLMILGQ LADAPYKKGT 180
  181 ELLEYLKFPQ KESTDKLMVD FVIWALNEKS KRMDYQMTGI KIVNEFKAEI EQKLEFDWSL 240
  241 IMSTCRLASK LAMKKFGFQQ FYNCFDTIST LYITIYSRTI SSKCLLAEAI SWISDSAEIL 300
  301 GHLDEQKNEP HFQKLSVFAK TKWNELNDLV MNHINSVFTS MSLTINPSIS MTSFLLNGPI 360
  361 SEPNVEFLSQ LINYLVSVEF PPMEIIHDRE ESGPLLRRIN QSEQKRLDIQ IKTQNDEVNR 420
  421 EDWRPVYVLM DYDVIVDKIR IALKIWDIDD FICILPSTVL DELDYQKTKN RAVRPVIRAL 480
  481 MELQAEGKIV LKKCDNERSC AEQLVQSARR SAEDHKHIVA FLCKNPSEQK EMEGVTFYDI 540
  541 DQFYMKYLE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..190] deduced N/A No confident structure predictions are available.
    2 View Details [191..361] deduced N/A No confident structure predictions are available.
    3 View Details [362..549] FFAS03 1.15 No description for 2hwyA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle