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Protein Overview: CE24890

General Information:
Name(s) found: CE24890 [WormBase]
Description(s) found:
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  • WBGene00017319 locus:mrps-9 Probable 40S ribosomal protein S9, mitochondrial status:Confirmed UniProt:P34388 protein_id:CCD62643.1 [WormBase]
  • gi|38258911|sp|P34388.2|RT09_CAEEL RecName: Full=Probable 40S ribosomal protein S9, mitochondrial; Flags: Precursor [NCBI NR]
  • gi|17552980|ref|NP_498815.1| hypothetical protein F09G8.3 [Caenorhabditis elegans] [NCBI NR]
  • gi|15145326|gb|AAK84520.1|L11247_3 Hypothetical protein F09G8.3 [Caenorhabditis elegans] [NCBI NR]
  • Probable 40S ribosomal protein S9, mitochondrial OS=Caenorhabditis elegans GN=mrps-9 PE=3 SV=2 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE24890 WBGene00017319 status:Confirmed SW:P34388 protein_id:AAK84520.1 [wormpep150.fasta]
  • 24890 WBGene00017319 status:Confirmed SW:P34388 protein_id:AAK84520.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • ribosomal protein S9 (43.7 kD) (3J357) [Caenorhabditis elegans]gi|15145326|gb|AAK84520.1| Hypothetical protein F09G8.3 [Caenorhabditis elegans]gi|38258911|sp|P34388|RT09_CAEEL Probable 40S ribosomal protein S9, mitochondrial precursor [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed SW:P34388 protein_id:AAK84520.1 [wormpep115.fasta.reversed]
  • CE24890 status:Partially_confirmed protein_id:AAK84520.1 [wormpep80.hongbin]
  • CE24890 WBGene00017319 status:Confirmed UniProt:RT09_CAEEL protein_id:AAK84520.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE24890 WBGene00017319 status:Confirmed UniProt:RT09_CAEEL protein_id:AAK84520.1| [wormORF-contam.fasta]
  • Probable 40S ribosomal protein S9, mitochondrial precursor [nr-271106-contam.fasta]
  • F09G8.3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein F09G8.3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE24890 WBGene00017319 status:Confirmed UniProt:P34388 protein_id:AAK84520.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE24890 WBGene00017319 locus:mrps-9 status:Confirmed UniProt:P34388 protein_id:CCD62643.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE24890 WBGene00017319 locus:mrps-9 status:Confirmed UniProt:P34388 protein_id:CCD62643.1 Probable 40S ribosomal protein S9, mitochondrial [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 392 amino acids

    Gene Ontology:
    Cellular Component: ribosome [IEALink to PubMed article]
    intracellular [IEALink to PubMed article]
    Biological Process: nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    translation [IEALink to PubMed article]
    Molecular Function: structural constituent of ribosome [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRIVLARSS RAMSSASPAS ASDSDTSVRK IGKALETYLK HSQQHVAMME KHRAEFETGR  60
   61 RHLAKMMSLD IHELDQEAID RAILYLFPSG LTDPNARPVM RPPDEILPKF QRFTFDEEGK 120
  121 PEGSRFFTLS PKIYGLLSDI GVKTHSVMKF YDEHVGSRSV NRSDLEPANL SGSQWVTADK 180
  181 LKKKLSEKFS KELYGQVIIA FEHLASLPGS AIEQKFLMEF REPMTASTGS KLFGPAIPEV 240
  241 HVCAVTNRRY AEVTTRCKDT RATVKVTDAG KGKFDIDGLQ LHDFRHLQAR EILLAPMIVS 300
  301 QSLGRFDVTA TTSCISNTLP EAPNKAPLMR SGGMSALPRA VRHGTALCVA ALQPEAIEPL 360
  361 RLSGLLTLDP RKNERSKVNQ PGARAKWIWK RR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..138] MSA 1.03395 View MSA. No confident structure predictions are available.
    2 View Details [139..245] deduced N/A No confident structure predictions are available.
    3 View Details [246..392] PSI-BLAST 41.522879 No description for 1vs5I was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • structural constituent of ribosome
    		•  7.32829196949019 bayes_pls_golite062009
  • structural molecule activity
    		•  6.75880680396215 bayes_pls_golite062009
  • RNA binding
    		•  1.40868766468494 bayes_pls_golite062009
  • catalytic activity
    		•  0.878454819018611 bayes_pls_golite062009
  • binding
    		•  0.872512498570204 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.63084241316774 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.555181608481691 bayes_pls_golite062009
  • exonuclease activity
    		•  0.48372105698577 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.368412900600617 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.19921800066954 bayes_pls_golite062009
  • protein binding
    		•  0.0913090112555771 bayes_pls_golite062009
  • DNA binding
    		•  0.0880977286684361 bayes_pls_golite062009
  • mRNA binding
    		•  0.0491645692672305 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  6.9430052008157E-5 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle