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Protein Overview: ggtb-1

General Information:
Name(s) found: ggtb-1 / CE24762 [WormBase]
Description(s) found:
Found 22 descriptions.
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  • WBGene00015099 locus:ggtb-1 Probable geranylgeranyl transferase type-2 subunit beta status:Confirmed UniProt:P41992 protein_id:CCD61597.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 335 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: cell death [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: catalytic activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFAGLLDFA RKDVDLPQNS PNELLKDLHA NFINQYEKNK NSYHYIMAEH LRVSGIYWCV  60
   61 NAMDLSKQLE RMSTEEIVNY VLGCRNTDGG YGPAPGHDSH LLHTLCAVQT LIIFNSIEKA 120
  121 DADTISEYVK GLQQEDGSFC GDLSGEVDTR FTLCSLATCH LLGRLSTLNI DSAVRFLMRC 180
  181 YNTDGGFGTR PGSESHSGQI YCCVGALAIA GRLDEIDRDR TAEWLAFRQC DSGGLNGRPE 240
  241 KLPDVCYSWW VLASLAILGR LNFIDSDAMK KFIYACQDDE TGGFADRPGD CADPFHTVFG 300
  301 IAALSLFGDD TLESVDPIFC MTKRCLGDKQ VEMYY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..335] PSI-BLAST 101.0 Rab geranylgeranyltransferase, beta subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein prenyltransferase activity
    		•  13.7736019666673 bayes_pls_golite062009
  • protein geranylgeranyltransferase activity
    		•  12.9757276506747 bayes_pls_golite062009
  • Rab geranylgeranyltransferase activity
    		•  12.8088011327065 bayes_pls_golite062009
  • prenyltransferase activity
    		•  11.6786310564018 bayes_pls_golite062009
  • CAAX-protein geranylgeranyltransferase activity
    		•  10.5569796788906 bayes_pls_golite062009
  • protein farnesyltransferase activity
    		•  4.15546866363415 bayes_pls_golite062009
  • binding
    		•  1.68564752993879 bayes_pls_golite062009
  • protein binding
    		•  1.45455287827127 bayes_pls_golite062009
  • transferase activity
    		•  1.0950430724883 bayes_pls_golite062009
  • catalytic activity
    		•  0.497699107100544 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle