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Protein Overview: mab-9

General Information:
Name(s) found: mab-9 / CE24016 [WormBase]
Description(s) found:
Found 23 descriptions.
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  • WBGene00003106 locus:mab-9 T-box protein 12 status:Confirmed UniProt:P90971 protein_id:CCD73630.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 346 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][IEALink to PubMed article]
    Biological Process: locomotion [IMPLink to PubMed article]
    post-embryonic hindgut morphogenesis [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    tail tip morphogenesis [IMPLink to PubMed article]
    regulation of transcription, DNA-dependent [IEALink to PubMed article]
    cell fate specification [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: transcription factor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRCASDRD DKDSEPVKKP RFSIANILDE VEDEEDVEVD VEDVDDVDLS SIPSKSPERS  60
   61 RGRPKIGLKM KEGNLPIECK LEGSELWAKF FDLGTEMIIT KSGRRMFPTV KVSFTNVILD 120
  121 ALYYIFLDVV PVDSKRYRYI YNKSAWLTAG KAEPVPKNRY YLHPDSPFTG DQLLKHVISF 180
  181 EKTKLTNNEV DKTGHLILNS MHKYQPRIHI VQRQKANPLD PNKVVMSEEK HCTYTFPETQ 240
  241 FMAVTAYQNQ LITKLKIEKN PFAKGFRDPT GRSPDEMERS PGDMMLSNFY HSSALQQAMF 300
  301 QQCLSKTLQL NPSIMMLYQN VFPTGNSLPA APTVPGNPAE ISIKSE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..346] PSI-BLAST 79.30103 T-box protein 3, tbx3

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  3.82913410895101 bayes_pls_golite062009
  • DNA binding
    		•  3.66817147088612 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.64801189357929 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.4281783503437 bayes_pls_golite062009
  • transcription factor activity
    		•  3.00834358271623 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.78676291654359 bayes_pls_golite062009
  • protein binding
    		•  2.61625563263605 bayes_pls_golite062009
  • transcription activator activity
    		•  2.550621891551 bayes_pls_golite062009
  • DNA strand annealing activity
    		•  1.17814334604363 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.03496325074066 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.90477390899557 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.67715424282347 bayes_pls_golite062009
  • chromatin binding
    		•  0.34201146905158 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.21694638611622 bayes_pls_golite062009
  • protein dimerization activity
    		•  0.0889583851427092 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle