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Protein Overview: CE21971

General Information:
Name(s) found: CE21971 [WormBase]
Description(s) found:
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  • WBGene00012896 locus:snrp-200 Putative U5 small nuclear ribonucleoprotein 200 kDa helicase status:Partially_confirmed UniProt:Q9U2G0 protein_id:CAB60351.1 [WormBase]
  • gi|6425308|emb|CAB60351.1| C. elegans protein Y46G5A.4, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17537127|ref|NP_496710.1| hypothetical protein Y46G5A.4 [Caenorhabditis elegans] [NCBI NR]
  • gi|12230659|sp|Q9U2G0.1|U520_CAEEL RecName: Full=Putative U5 small nuclear ribonucleoprotein 200 kDa helicase [NCBI NR]
  • Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE21971 WBGene00012896 status:Partially_confirmed SW:Q9U2G0 protein_id:CAB60351.1 [wormpep150.fasta]
  • 21971 WBGene00012896 status:Partially_confirmed SW:Q9U2G0 protein_id:CAB60351.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • u5 small nuclear ribonucleoprotein helicase (2N18) [Caenorhabditis elegans]gi|6425308|emb|CAB60351.1| Hypothetical protein Y46G5A.4 [Caenorhabditis elegans]gi|12230659|sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed SW:Q9U2G0 protein_id:CAB60351.1 [wormpep115.fasta.reversed]
  • CE21971 status:Partially_confirmed SW:Q9U2G0 protein_id:CAB60351.1 [wormpep80.hongbin]
  • CE21971 WBGene00012896 status:Partially_confirmed UniProt:U520_CAEEL protein_id:CAB60351.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE21971 WBGene00012896 status:Partially_confirmed UniProt:U520_CAEEL protein_id:CAB60351.1| [wormORF-contam.fasta]
  • Y46G5A.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Putative U5 small nuclear ribonucleoprotein 200 kDa helicase [nr-271106-contam.fasta]
  • Hypothetical protein Y46G5A.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE21971 WBGene00012896 status:Partially_confirmed UniProt:Q9U2G0 protein_id:CAB60351.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • CE21971 WBGene00012896 locus:snrp-200 status:Partially_confirmed UniProt:Q9U2G0 protein_id:CAB60351.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE21971 WBGene00012896 locus:snrp-200 status:Partially_confirmed UniProt:Q9U2G0 protein_id:CAB60351.1 Putative U5 small nuclear ribonucleoprotein 200 kDa helicase [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 2145 amino acids

    Gene Ontology:
    Cellular Component: proteinaceous extracellular matrix [IEALink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed article]
    DNA recombination [IEALink to PubMed article]
    cell adhesion [IEALink to PubMed article]
    blood coagulation [IEALink to PubMed article]
    growth [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    nucleotide binding [IEALink to PubMed article]
    ATP binding [IEALink to PubMed article]
    nucleoside-triphosphatase activity [IEALink to PubMed article]
    ATP-dependent helicase activity [IEALink to PubMed article]
    helicase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADELARIQQ YEYRQNSNLV LSVDYNLTDR RGREEPTGEV LPITDKEMRK MKMGDRAIKG  60
   61 KAPVQDQKKK RKKKDDEKAQ QFGRNVLVDN NELMGAYKPR TQETKQTYEV ILSFILDALG 120
  121 DVPREVLCGA ADEVLLTLKN DKFRDKEKKK EVEALLGPLT DDRIAVLINL SKKISDFSIE 180
  181 EENKPEGDGD IYENEGVNVQ FDSDEEEDDG GMVNEIKGDS EEESEEEEGV DTDYTATLKG 240
  241 DGHLTEDEQK ARGILHPRDI DAHWIQRSLA KYFKDPLIAQ QKQTEVIGIL KNAADDRDAE 300
  301 NQLVLLLGFD QFEFIKCLRQ NRLMILYCTL LRQANEKERL QIEDDMRSRP ELHPILALLQ 360
  361 ETDEGSVVQV EKSKRDAEKS KKAATAANEA ISAGQWQAGR KMLDLNDLTF SQGSHLMSNK 420
  421 RCELPDGSYR RQKKSYEEIH VPALKPRPFA EGEKLVSVSE LPKWAQPAFD GYKSLNRIQS 480
  481 RLCDSALRSK EHLLLCAPTG AGKTNVALLT MLQEIGNHLA EDGSVKLDEF KIVYIAPMKS 540
  541 LVQEMVGSFS KRLAPFGITV GEMTGDAQMS KEQFMATQVI VCTPEKYDVV TRKGGERAYN 600
  601 QMVRLLIIDE IHLLHDDRGP VLESIVVRTI RQMEQNHDEC RLVGLSATLP NYQDVATFLR 660
  661 VKPEHLHFFD NSYRPVPLEQ QYIGVTEKKA LKRFQAMNEV VYDKIMEHAG KSQVLVFVHS 720
  721 RKETAKTAKA IRDACLEKDT LSAFMREGSA STEILRTEAE QAKNLDLKDL LPYGFAIHHA 780
  781 GMNRVDRTLV EDLFADRHIQ VLFSTATLAW GVNLPAHTVI IKGTQIYNPE KGRWTELGAL 840
  841 DIMQMLGRAG RPQYDDRGEG ILITNHSELQ YYLSLMNQQL PVESQMVSRL TDMLNAEVVL 900
  901 GTVSSVSEAT NWLGYTFLFV RMLKNPTLYG ITHEQARADP LLEQRRADLI HTACVLLDKA 960
  961 GLIKYDKRSG IIQATELGRI ASHFYCTYES MQTYNKLLVE TCSDIDLFRI FSMSSEFKLL1020
 1021 SVRDEEKLEL QKMAEHAPIP IKENLDEASA KTNVLLQAYI SQLKLEGFAL QADMVFVAQS1080
 1081 AGRLFRALFE IVLWRGWAGL AQKVLTLCKM VTQRQWGSLN PLHQFKKIPS EVVRSIDKKN1140
 1141 YSFDRLYDLD QHQLGDLIKM PKMGKPLFKF IRQFPKLEMT TLIQPITRTT MRIELTITPD1200
 1201 FKWDEKVHGS AEGFWIFIED TDGEKILHHE FFLLKQKFCS DEHVVKMIVP MFDPMPPLYY1260
 1261 VRIVSDRWIG AETVLPISFR HLILPEKYPP PTELLDLQPL PISAVTNKEF QTVFAESGFK1320
 1321 VFNPIQTQVF RTVFESNENV IVCAPNGSGK TAIAELAVLR HFENTPEAKA VYITPMEDMA1380
 1381 TKVYADWKRR LEPAIGHTIV LLTGEQTMDL KLAQRGQLII STPERWDNIS RRWKQRKSVQ1440
 1441 NVKLFIADDL HMIGASNGAV FEVVCSRTRY ISSQLESAVR VVALSSSLTN ARDLGMWLGC1500
 1501 SASATFNFMP STRPVPLDLE IKSFNLSHNA SRFAAMERPV YQAICRHAGK LEPKPALVFV1560
 1561 PVRRQTRPVA VALLTMALAD GAPKRFLRLA EHDDTFQALL ADIEDESLRE SVSCGVGFLH1620
 1621 EGTAPKDVHI VQQLFESNAI QVCVVPRGMC YQIEMSAYLV VVMDTQFYNG KYHVYEDYPI1680
 1681 ADMLHMVGLA NRPILDSDAK CVVMCQTSKR AYYKKFLCDP LPVESHLDHC LHDHFNAEIV1740
 1741 TKTIENKQDA IDYLTWTLLY RRMTQNPNYY NLQGTTHRHL SDALSELVEL TLKDLENSKC1800
 1801 IAVKDEMDTV SLNLGMIASY YYISYQTIEL FSMSLKEKTK TRALIEIISA SSEFGNVPMR1860
 1861 HKEDVILRQL AERLPGQLKN QKFTDPHVKV NLLIHAHLSR VKLTAELNKD TELIVLRACR1920
 1921 LVQACVDVLS SNGWLSPAIH AMELSQMLTQ AMYSNEPYLK QLPHCSAALL ERAKAKEVTS1980
 1981 VFELLELEND DRSDILQMEG AELADVARFC NHYPSIEVAT ELENDVVTSN DNLMLAVSLE2040
 2041 RDNDIDGLAP PVVAPLFPQK RKEEGWWLVI GDSESNALLT IKRLVINEKS SVQLDFAAPR2100
 2101 PGHHKFKLFF ISDSYLGADQ EFDVAFKVEE PGRSNRKRKH EKEED

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle