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Protein Overview: abce-1

General Information:
Name(s) found: abce-1 / CE21713 [WormBase]
Description(s) found:
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  • WBGene00012714 locus:abce-1 status:Partially_confirmed UniProt:Q9U2K8 protein_id:CAB54424.1 [WormBase]
  • pir||T26761 hypothetical protein Y39E4B.1 - Caenorhabditis elegans [NCBI NR]
  • gi|5824775|emb|CAB54424.1| C. elegans protein Y39E4B.1, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17555800|ref|NP_499717.1| ABC transporter, class E family member (abce-1) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE21713 WBGene00012714 locus:tag-351 status:Partially_confirmed TR:Q9U2K8 protein_id:CAB54424.1 [wormpep150.fasta]
  • 21713 WBGene00012714 status:Partially_confirmed TR:Q9U2K8 protein_id:CAB54424.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • l inhibitor (69.0 kD) (3O249) [Caenorhabditis elegans]gi|5824775|emb|CAB54424.1| Hypothetical protein Y39E4B.1 [Caenorhabditis elegans]gi|7509703|pir||T26761 hypothetical protein Y39E4B.1 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • CE21713 WBGene00012714 status:Partially_confirmed TR:Q9U2K8 protein_id:CAB54424.1 [wormpep132.fasta]
  • 21713 WBGene00012714 locus:tag-351 status:Partially_confirmed TR:Q9U2K8 protein_id:CAB54424.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • status:Partially_confirmed TR:Q9U2K8 protein_id:CAB54424.1 [wormpep115.fasta.reversed]
  • CE21713 status:Partially_confirmed TR:Q9U2K8 protein_id:CAB54424.1 [wormpep80.hongbin]
  • CE21713 WBGene00012714 locus:abce-1 status:Partially_confirmed UniProt:Q9U2K8_CAEEL protein_id:CAB54424.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE21713 WBGene00012714 locus:abce-1 status:Partially_confirmed UniProt:Q9U2K8_CAEEL protein_id:CAB54424.1| [wormORF-contam.fasta]
  • Hypothetical protein Y39E4B.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Temporarily Assigned Gene name family member (tag-351) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE21713 WBGene00012714 locus:abce-1 status:Partially_confirmed TR:Q9U2K8 protein_id:CAB54424.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE21713 WBGene00012714 locus:abce-1 status:Partially_confirmed UniProt:Q9U2K8 protein_id:CAB54424.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • ABC transporter, class E OS=Caenorhabditis elegans GN=abce-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 610 amino acids

    Gene Ontology:
    Cellular Component: Gram-negative-bacterium-type cell wall [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    outer membrane-bounded periplasmic space [IEALink to PubMed article]
    Biological Process: embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    transport [IEALink to PubMed article]
    nodulation [IEALink to PubMed article]
    growth [IMPLink to PubMed article]
    positive regulation of multicellular organism growth [IMPLink to PubMed article]
    cell division [IEALink to PubMed article]
    cobalt ion transport [IEALink to PubMed article]
    electron transport [IEALink to PubMed article]
    locomotory behavior [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    nitrate transport [IEALink to PubMed article]
    phosphonate transport [IEALink to PubMed article]
    polyamine transport [IEALink to PubMed article]
    cytochrome complex assembly [IEALink to PubMed article]
    molybdate ion transport [IEALink to PubMed article]
    Molecular Function: ATPase activity [IEALink to PubMed article]
    nucleotide binding [IEALink to PubMed article]
    ATP binding [IEALink to PubMed article]
    ATPase activity, coupled to transmembrane movement of substances [IEALink to PubMed article]
    nitrate transmembrane transporter activity [IEALink to PubMed article]
    electron carrier activity [IEALink to PubMed article]
    molybdate ion transmembrane transporter activity [IEALink to PubMed article]
    nucleoside-triphosphatase activity [IEALink to PubMed article]
    polyamine-transporting ATPase activity [IEALink to PubMed article]
    iron-sulfur cluster binding [IEALink to PubMed article]
    phosphonate transmembrane-transporting ATPase activity [IEALink to PubMed article]
    transporter activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRKGPLIKN NETDVPLRIA IVEKDRCKPK NCGLACKRAC PVNRQGKQCI VVEATSTISQ  60
   61 ISEILCIGCG ICVKKCPYDA IKIINLPANL ANETTHRYSQ NSFKLHRLPT PRCGEVLGLV 120
  121 GTNGIGKSTA LKILAGKQKP NLGNFQKEQE WTTIINHFRG SELQNYFTRI LEDTLKCVIK 180
  181 PQYVDQIPRA AKGTVEKNLT RKHDNDNLNS VIDQMELRGL LDREIDQLSG GELQRFAIAM 240
  241 CCVQKADVYM FDEPSSYLDV KQRLKAAAII RERVSDTNYV VVVEHDLAVL DYLSDFICCL 300
  301 YGVPGVYGVV TLPSGVREGI NMFLEGFIRT ENMRFRESKL SFKTSEQQED IKRTGNIKYP 360
  361 SMSKTLGNFH LDVEAGDFSD SEIIVMLGEN GTGKTTMIKM MAGSLKPEDE NTELPHVSIS 420
  421 YKPQKISPKS ETTVRFMLHD KIQNMYEHPQ FKTDVMNPLM MEQLLDRNVK ELSGGELQRV 480
  481 ALALCLGKTA SLYLIDEPSA YLDSEQRLHA AKVIKRFIMH AKKTAFVVEH DFIMATYLAD 540
  541 RVVVFEGQPS VKCTACKPQS LLEGMNRFLK MLDITFRRDQ ETYRPRINKL DSVKDVDQKK 600
  601 SGQFFFLDDN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..77] FFAS03 2.42 Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
    2 View Details [78..610] PSI-BLAST 97.39794 RNase-L Inhibitor

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.53159718897813 bayes_pls_golite062009
  • transporter activity
    		•  0.768779013335823 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.519838051435455 bayes_pls_golite062009
  • catalytic activity
    		•  0.481338897251745 bayes_pls_golite062009
  • protein binding
    		•  0.247801183125276 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle