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Protein Overview: car-1

General Information:
Name(s) found: car-1 / CE21413 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00012484 locus:car-1 status:Confirmed UniProt:Q9XW17 protein_id:CAA22317.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 340 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    P granule [IDALink to PubMed article]
    spindle [IDALink to PubMed article]
    Biological Process: embryonic cleavage [IMPLink to PubMed articleLink to PubMed article]
    cell death [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    cytokinesis [IMPLink to PubMed articleLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    positive regulation of locomotion [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQTPYIGS KISLISKLDI RYEGILYTVD TNDSTIALAK VRSFGTEKRP TANPVAARDD  60
   61 VYEYIIFKAS DIKDLIVCDT PKMANIGGGL PYDPAIISVS SRSAPASDGA PAASAGSSRA 120
  121 GTPSRNSPLG QIIQNQRPGR GGYQQNFQAN RGYNNYRGGF AGGYNNQRGH NNYGVPRVNH 180
  181 REKLKFESDF DFEKANEKFQ EVLVDNLEKL NIEDKAEPEV EEKKDAAFYD KKTSFFDNIS 240
  241 CESLEKAEGK TGRPDWKKER ETNQETFGHN AVRSLNYRRG FGGRGRGGNR GYGGYNNGYQ 300
  301 HQHQHRGGYN GGYRQNNGGY RRGGYAPRDN QGNTAAAAEQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..80] PSI-BLAST 41.30103 NMR Solution Structure of protein from Zebra Fish Dr.13312
    2 View Details [81..188] PSI-BLAST 4.154902 Sec24
    3 View Details [189..340] MSA 1.082986 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.1015463487552 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.30591269457386 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle