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View Structure Prediction Details

Protein: car-1
Organism: Caenorhabditis elegans
Length: 340 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for car-1.

Description E-value Query
Range
Subject
Range
gi|187033017, gi... - gi|39592431|emb|CAE63508.1| Hypothetical protein CBG07987 [Caenorhabditis briggsae], gi|187033017|em...
317.0 [0..1] [340..1]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQTPYIGS KISLISKLDI RYEGILYTVD TNDSTIALAK VRSFGTEKRP TANPVAARDD  60
   61 VYEYIIFKAS DIKDLIVCDT 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.30103
Match: 2fb7A
Description: NMR Solution Structure of protein from Zebra Fish Dr.13312
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.1015463487552 bayes_pls_golite062009
nucleic acid binding 0.30591269457386 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [81-188]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKMANIGGGL PYDPAIISVS SRSAPASDGA PAASAGSSRA GTPSRNSPLG QIIQNQRPGR  60
   61 GGYQQNFQAN RGYNNYRGGF AGGYNNQRGH NNYGVPRVNH REKLKFES

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.154902
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [189-340]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFDFEKANEK FQEVLVDNLE KLNIEDKAEP EVEEKKDAAF YDKKTSFFDN ISCESLEKAE  60
   61 GKTGRPDWKK ERETNQETFG HNAVRSLNYR RGFGGRGRGG NRGYGGYNNG YQHQHQHRGG 120
  121 YNGGYRQNNG GYRRGGYAPR DNQGNTAAAA EQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle