| Protein: | car-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 340 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for car-1.
| Description | E-value | Query Range |
Subject Range |
|
|
317.0 | [0..1] | [340..1] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MSNQTPYIGS KISLISKLDI RYEGILYTVD TNDSTIALAK VRSFGTEKRP TANPVAARDD 60
61 VYEYIIFKAS DIKDLIVCDT
|
| Detection Method: |  |
| Confidence: | 41.30103 |
| Match: | 2fb7A |
| Description: | NMR Solution Structure of protein from Zebra Fish Dr.13312 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.1015463487552 | bayes_pls_golite062009 |
| nucleic acid binding | 0.30591269457386 | bayes_pls_golite062009 |
|
Region A: Residues: [81-188] |
1 11 21 31 41 51
| | | | | |
1 PKMANIGGGL PYDPAIISVS SRSAPASDGA PAASAGSSRA GTPSRNSPLG QIIQNQRPGR 60
61 GGYQQNFQAN RGYNNYRGGF AGGYNNQRGH NNYGVPRVNH REKLKFES
|
| Detection Method: | |
| Confidence: | 4.154902 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [189-340] |
1 11 21 31 41 51
| | | | | |
1 DFDFEKANEK FQEVLVDNLE KLNIEDKAEP EVEEKKDAAF YDKKTSFFDN ISCESLEKAE 60
61 GKTGRPDWKK ERETNQETFG HNAVRSLNYR RGFGGRGRGG NRGYGGYNNG YQHQHQHRGG 120
121 YNGGYRQNNG GYRRGGYAPR DNQGNTAAAA EQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
