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Protein Overview: unc-62

General Information:
Name(s) found: unc-62 / CE21219 [WormBase]
Description(s) found:
Found 22 descriptions.
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  • WBGene00006796 locus:unc-62 Homeobox protein unc-62 status:Confirmed UniProt:Q9N5D6 protein_id:CCD72261.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 564 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: oocyte construction [IMPLink to PubMed article]
    locomotory behavior [IMPLink to PubMed articleLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    regulation of transcription, DNA-dependent [IEALink to PubMed article]
    oviposition [IMPLink to PubMed articleLink to PubMed article]
    cell migration [IMPLink to PubMed article]
    positive regulation of multicellular organism growth [IMPLink to PubMed article]
    Molecular Function: transcription factor activity [IEALink to PubMed article]
    sequence-specific DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGDSKVWAH ASADTWAVQN GISTYDLDTS SIKREKRDHN EQFNDGYGPP PGSASADPAS  60
   61 YIADPAAFYN LYTNMGGAPT STPMMHHEMG EAMKRDKESI YAHPLYPLLV LLFEKCELAT 120
  121 STPRDTSRDG STSSDVCSSA SFKDDLNEFV RHTQENADKQ YYVPNPQLDQ IMLQSIQMLR 180
  181 FHLLELEKVH ELCDNFCNRY VVCLKGKMPL DIVGDERASS SQPPMSPGSM GHLGHSSSPS 240
  241 MAGGATPMHY PPPYEPQSVP LPENAGVMGG HPMEGSSMAY SMAGMAAAAA SSSSSSNQAG 300
  301 DHPLANGGTL HSTAGASQTL LPIAVSSPST CSSGGLRQDS TPLSGETPMG HANGNSMDSI 360
  361 SEAGDEFSVC GSNDDGRDSV LSDSANGSQN GKRKVPKVFS KEAITKFRAW LFHNLTHPYP 420
  421 SEEQKKQLAK ETGLTILQVN NWFINARRRI VQPMIDQNNR AGRSGQMNVC KNRRRNRSEQ 480
  481 SPGPSPDSGS DSGANYSPDP SSLAASTAMP YPAEFYMQRT MPYGGFPSFT NPAMPFMNPM 540
  541 MGFQVAPTVD ALSQQWVDLS APHE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..87] deduced N/A No confident structure predictions are available.
    2 View Details [88..323] MSA 4.52597 View MSA. No confident structure predictions are available.
    3 View Details [324..391] deduced N/A No confident structure predictions are available.
    4 View Details [392..470] PSI-BLAST 11.69897 Solution structure of the homeobox domain of human homeobox protein PKNOX1
    5 View Details [471..564] MSA 3.165995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • transcription regulator activity
    		•  1.62959077995642 bayes_pls_golite062009
  • binding
    		•  1.48969201384255 bayes_pls_golite062009
  • DNA binding
    		•  1.2137926921894 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.02805703044131 bayes_pls_golite062009
  • transcription factor activity
    		•  0.89626527070971 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.06790788268651 bayes_pls_golite062009
  • protein binding
    		•  0.012115247005138 bayes_pls_golite062009
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle