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Protein Overview: col-120

General Information:
Name(s) found: col-120 / CE20194 [WormBase]
Description(s) found:
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  • WBGene00000694 locus:col-120 status:Confirmed UniProt:Q9XWR2 protein_id:CAA21586.1 [WormBase]
  • pir||T26465 hypothetical protein Y11D7A.11 - Caenorhabditis elegans [NCBI NR]
  • gi|3880729|emb|CAA21586.1| C. elegans protein Y11D7A.11, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17542966|ref|NP_501617.1| COLlagen family member (col-120) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE20194 WBGene00000694 locus:col-120 status:Confirmed TR:Q9XWR2 protein_id:CAA21586.1 [wormpep150.fasta]
  • 20194 WBGene00000694 locus:col-120 status:Confirmed TR:Q9XWR2 protein_id:CAA21586.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • COLlagen structural gene (col-120) [Caenorhabditis elegans]gi|3880729|emb|CAA21586.1| Hypothetical protein Y11D7A.11 [Caenorhabditis elegans]gi|7509391|pir||T26465 hypothetical protein Y11D7A.11 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:col-120 status:Partially_confirmed TR:Q9XWR2 protein_id:CAA21586.1 [wormpep115.fasta.reversed]
  • CE20194 status:Partially_confirmed TR:Q9XWR2 protein_id:CAA21586.1 [wormpep80.hongbin]
  • CE20194 WBGene00000694 locus:col-120 status:Confirmed UniProt:Q9XWR2_CAEEL protein_id:CAA21586.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE20194 WBGene00000694 locus:col-120 status:Confirmed UniProt:Q9XWR2_CAEEL protein_id:CAA21586.1| [wormORF-contam.fasta]
  • Hypothetical protein Y11D7A.11 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • COLlagen family member (col-120) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE20194 WBGene00000694 locus:col-120 status:Confirmed UniProt:Q9XWR2 protein_id:CAA21586.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • COLlagen OS=Caenorhabditis elegans GN=col-120 PE=4 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 313 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEALink to PubMed article]
    Biological Process: phosphate transport [IEALink to PubMed article]
    Molecular Function: structural constituent of cuticle [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLKKNLVNS EEDELRKVAF VATVVSAASG IMCIILIPGL YTYLQYIQSS VQTDVGFCVD  60
   61 GAKNLENMYE STKAVGSGPV KRQAGYGASS PSRASGSHPA PSPYDAASTS SSSSSDSCCS 120
  121 CGIGLAGPAG FPGRPGRDGI DGPAGKPGRD GQDLDGESSS DGSQIELDCP AGPPGPPGNP 180
  181 GPQGNSGRPG MDGMPGRNGR CGRPGEQGER GPNGEDGRPG RRGDDGMPGT VNEIPGQAGP 240
  241 PGLRGAPGAT GSQGPRGNDG RPGNKGPAGP PGDQGFDGAP GGPGADGEPG AQGPLGAKGE 300
  301 CSHCPPPRTA PGY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..313] PSI-BLAST 30.221849 No description for 1y0fA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle