YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-120
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLKKNLVNS EEDELRKVAF VATVVSAASG IMCIILIPGL YTYLQYIQSS VQTDVGFCVD  60
   61 GAKNLENMYE STKAVGSGPV KRQAGYGASS PSRASGSHPA PSPYDAASTS SSSSSDSCCS 120
  121 CGIGLAGPAG FPGRPGRDGI DGPAGKPGRD GQDLDGESSS DGSQIELDCP AGPPGPPGNP 180
  181 GPQGNSGRPG MDGMPGRNGR CGRPGEQGER GPNGEDGRPG RRGDDGMPGT VNEIPGQAGP 240
  241 PGLRGAPGAT GSQGPRGNDG RPGNKGPAGP PGDQGFDGAP GGPGADGEPG AQGPLGAKGE 300
  301 CSHCPPPRTA PGY

Type	Start	End	Confidence
Cytoplasmic	1	19	0.94
Transmembrane Helix	20	42	0.95
Non-Cytoplasmic	43	313	0.99