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View Structure Prediction Details

Protein: col-120
Organism: Caenorhabditis elegans
Length: 313 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-120.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
278.0 [0..45] [312..1455]

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Predicted Domain #1
Region A:
Residues: [1-313]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLKKNLVNS EEDELRKVAF VATVVSAASG IMCIILIPGL YTYLQYIQSS VQTDVGFCVD  60
   61 GAKNLENMYE STKAVGSGPV KRQAGYGASS PSRASGSHPA PSPYDAASTS SSSSSDSCCS 120
  121 CGIGLAGPAG FPGRPGRDGI DGPAGKPGRD GQDLDGESSS DGSQIELDCP AGPPGPPGNP 180
  181 GPQGNSGRPG MDGMPGRNGR CGRPGEQGER GPNGEDGRPG RRGDDGMPGT VNEIPGQAGP 240
  241 PGLRGAPGAT GSQGPRGNDG RPGNKGPAGP PGDQGFDGAP GGPGADGEPG AQGPLGAKGE 300
  301 CSHCPPPRTA PGY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.221849
Match: 1y0fA
Description: No description for 1y0fA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle