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Protein Overview: smo-1

General Information:
Name(s) found: smo-1 / CE18056 [WormBase]
Description(s) found:
Found 25 descriptions.
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  • WBGene00004888 locus:smo-1 Small ubiquitin-related modifier status:Confirmed UniProt:P55853 protein_id:CCD72942.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 91 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: embryonic development [IMPLink to PubMed article]
    negative regulation of vulval development [IMPLink to PubMed article]
    collagen and cuticulin-based cuticle attachment to epithelium [IMPLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    gastrulation with mouth forming first [IMPLink to PubMed article]
    protein modification process [IEALink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    positive regulation of multicellular organism growth [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDAAQAGD NAEYIKIKVV GQDSNEVHFR VKYGTSMAKL KKSYADRTGV AVNSLRFLFD  60
   61 GRRINDDDTP KTLEMEDDDV IEVYQEQLGG F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..91] PSI-BLAST 25.39794 No description for 2awtA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • small conjugating protein ligase activity
    		•  3.71144418714309 bayes_pls_golite062009
  • SUMO ligase activity
    		•  3.35933316233554 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  2.89535476350045 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  2.72499875710239 bayes_pls_golite062009
  • binding
    		•  2.35732272412639 bayes_pls_golite062009
  • protein tag
    		•  2.15059229834935 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  2.00465244189638 bayes_pls_golite062009
  • protein binding
    		•  1.86841453215444 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.73491621577173 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.48202890995325 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.33586939049254 bayes_pls_golite062009
  • DNA binding
    		•  1.17550401560114 bayes_pls_golite062009
  • tubulin binding
    		•  0.984710328639471 bayes_pls_golite062009
  • microtubule binding
    		•  0.721760846967789 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.599634454232833 bayes_pls_golite062009
  • structural molecule activity
    		•  0.576819726104993 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.0816453389356582 bayes_pls_golite062009
  • protein kinase activity
    		•  0.038557482883633 bayes_pls_golite062009
  • kinase activity
    		•  0.0363894273406812 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle