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Protein Overview: col-103

General Information:
Name(s) found: col-103 / CE17882 [WormBase]
Description(s) found:
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  • WBGene00000677 locus:col-103 status:Confirmed UniProt:O45114 protein_id:CCD71939.1 [WormBase]
  • pir||E88633 protein F56B3.1 [imported] - Caenorhabditis elegans [NCBI NR]
  • gi|17540706|ref|NP_499982.1| COLlagen family member (col-103) [Caenorhabditis elegans] [NCBI NR]
  • gi|13559616|gb|AAK29827.1| Collagen protein 103, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE17882 WBGene00000677 locus:col-103 status:Confirmed TR:O45114 protein_id:AAK29827.1 [wormpep150.fasta]
  • 17882 WBGene00000677 locus:col-103 status:Confirmed TR:O45114 protein_id:AAK29827.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • COLlagen structural gene (33.8 kD) (col-103) [Caenorhabditis elegans]gi|13559616|gb|AAK29827.1| Collagen protein 103 [Caenorhabditis elegans]gi|25385141|pir||E88633 protein F56B3.1 [imported] - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:col-103 status:Confirmed TR:O45114 protein_id:AAK29827.1 [wormpep115.fasta.reversed]
  • CE17882 status:Confirmed TR:O45114 protein_id:AAK29827.1 [wormpep80.hongbin]
  • CE17882 WBGene00000677 locus:col-103 status:Confirmed UniProt:O45114_CAEEL protein_id:AAK29827.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE17882 WBGene00000677 locus:col-103 status:Confirmed UniProt:O45114_CAEEL protein_id:AAK29827.1| [wormORF-contam.fasta]
  • Collagen protein 103 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • COLlagen family member (col-103) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE17882 WBGene00000677 locus:col-103 status:Confirmed UniProt:O45114 protein_id:AAK29827.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE17882 WBGene00000677 locus:col-103 status:Confirmed UniProt:O45114 protein_id:CCD71939.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • COLlagen OS=Caenorhabditis elegans GN=col-103 PE=4 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 371 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEALink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    phosphate transport [IEALink to PubMed article]
    Molecular Function: structural constituent of cuticle [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASIKFATG AAVLSGVTIL ACLFFAAQVF NDVNSLYDEV MVDMDAFKVK SNIAWEAIND  60
   61 VIAPNREKRG YAQYGGGGGY GGGHGGAAVG GGYGGAVGGG GGGGYGGGHG GGHGGAVGGG 120
  121 YGGGGGGGGG CQCSPSSNTC PPGPRGPPGQ AGLDGLPGAP GQPGSNGGAG SNGASEGSAG 180
  181 GCKTCPAGPP GPPGPAGQAG RPGNDGQPGA PSFGGGVGAP GAPGPAGDAG SPGQPGAPGQ 240
  241 PGRPGKNAQG GSSRPGPPGP AGPPGPPGNN GAPGGGYGVG PPGPPGPSGR PGAPGQPGPD 300
  301 GQPGAPGNDG TPGTDAAYCP CPGRGGGGGG YGAGAHHGGP QGFSRRKVAR KVLAKKRVAV 360
  361 QRKAAAAARH A

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..371] PSI-BLAST 40.522879 No description for 1y0fB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle