YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-103
Protein type:	Globular with Signal Peptide
Type Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASIKFATG AAVLSGVTIL ACLFFAAQVF NDVNSLYDEV MVDMDAFKVK SNIAWEAIND  60
   61 VIAPNREKRG YAQYGGGGGY GGGHGGAAVG GGYGGAVGGG GGGGYGGGHG GGHGGAVGGG 120
  121 YGGGGGGGGG CQCSPSSNTC PPGPRGPPGQ AGLDGLPGAP GQPGSNGGAG SNGASEGSAG 180
  181 GCKTCPAGPP GPPGPAGQAG RPGNDGQPGA PSFGGGVGAP GAPGPAGDAG SPGQPGAPGQ 240
  241 PGRPGKNAQG GSSRPGPPGP AGPPGPPGNN GAPGGGYGVG PPGPPGPSGR PGAPGQPGPD 300
  301 GQPGAPGNDG TPGTDAAYCP CPGRGGGGGG YGAGAHHGGP QGFSRRKVAR KVLAKKRVAV 360
  361 QRKAAAAARH A

Type	Start	End	Confidence
Signal Peptide	1	26	0.79
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	371	0.91