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View Structure Prediction Details

Protein: col-103
Organism: Caenorhabditis elegans
Length: 371 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-103.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
356.0 [0..34] [370..1393]

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Predicted Domain #1
Region A:
Residues: [1-371]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASIKFATG AAVLSGVTIL ACLFFAAQVF NDVNSLYDEV MVDMDAFKVK SNIAWEAIND  60
   61 VIAPNREKRG YAQYGGGGGY GGGHGGAAVG GGYGGAVGGG GGGGYGGGHG GGHGGAVGGG 120
  121 YGGGGGGGGG CQCSPSSNTC PPGPRGPPGQ AGLDGLPGAP GQPGSNGGAG SNGASEGSAG 180
  181 GCKTCPAGPP GPPGPAGQAG RPGNDGQPGA PSFGGGVGAP GAPGPAGDAG SPGQPGAPGQ 240
  241 PGRPGKNAQG GSSRPGPPGP AGPPGPPGNN GAPGGGYGVG PPGPPGPSGR PGAPGQPGPD 300
  301 GQPGAPGNDG TPGTDAAYCP CPGRGGGGGG YGAGAHHGGP QGFSRRKVAR KVLAKKRVAV 360
  361 QRKAAAAARH A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.522879
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle