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Protein Overview: CE16735

General Information:
Name(s) found: CE16735 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00013998 status:Confirmed UniProt:G5EG49 protein_id:CAB05314.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 433 amino acids

    Gene Ontology:
    Cellular Component: transcription factor TFIIE complex [IEALink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    morphogenesis of an epithelium [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    transcription initiation from RNA polymerase II promoter [IEALink to PubMed article]
    Molecular Function: RNA polymerase II transcription factor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGPATSGS SSAHTETQVV DEIPEALNTI LLMVVKNFFS SEHFIIVYHI MRAQCIREEN  60
   61 LKARIQFDQK MLRQLLASLK AEKLVKERTI TQKNENNRTV SIIFYYINYR AVLNVVRYKI 120
  121 DHMRQKLESR EQMDTNRAHY RCGACQSSYD MLEINRILDA ESGRLICWRC HGDVLADETV 180
  181 VPSRTTRTAV ARFNEQMTPL FSHICALNGI QLAPHLLEPD ITKYLEDDKE LQLQQQQMDF 240
  241 TSGGGGGGRI QLGGVAHSYQ NIASINYQNG DAVFVDLNAD INKGPVEEAK IMPEWLKDNA 300
  301 IGGGEASHNE HVLDQAKTEE EETSTKQRRY GPSLDYLKEI ECSSEESAPN VKIEEPPAKQ 360
  361 IKMEVDEEAI KMEVDNDESE EEDLIHVAGR ALPLSQITPR MVENEMSELE KESYCSVVQD 420
  421 LFAMFFSQQI AIH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..142] PSI-BLAST 20.0 An extended winged helix domain in general transcription factor E/IIE alpha
    2 View Details [143..178] PSI-BLAST 16.30103 Solution structure of the zinc finger domain of TFIIE alpha
    3 View Details [179..433] MSA 1.056973 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  2.04426015975991 bayes_pls_golite062009
  • binding
    		•  1.99063774159045 bayes_pls_golite062009
  • DNA binding
    		•  1.63968725174405 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.51035375793093 bayes_pls_golite062009
  • transcription factor activity
    		•  1.16072080355661 bayes_pls_golite062009
  • transcription activator activity
    		•  0.14130464856269 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.13573040816325 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.521842894436076 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle