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Protein Overview: clec-38

General Information:
Name(s) found: clec-38 / CE16471 [WormBase]
Description(s) found:
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  • WBGene00012025 locus:clec-38 Lectin C-type domain short and long forms (2 domains) status:Partially_confirmed UniProt:O45824 protein_id:CAB04828.1 [WormBase]
  • pir||T25280 hypothetical protein T25E12.10 - Caenorhabditis elegans [NCBI NR]
  • gi|3880232|emb|CAB04828.1| C. elegans protein T25E12.10, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17564688|ref|NP_507233.1| C-type LECtin family member (clec-38) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE16471 WBGene00012025 locus:clec-38 Lectin C-type domain short and long forms (2 domains) status:Partially_confirmed TR:O45824 protein_id:CAB04828.1 [wormpep150.fasta]
  • 16471 WBGene00012025 Lectin C-type domain short and long forms (2 domains) status:Partially_confirmed TR:O45824 protein_id:CAB04828.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • c-type lectin family member (5R214) [Caenorhabditis elegans]gi|3880232|emb|CAB04828.1| Hypothetical protein T25E12.10 [Caenorhabditis elegans]gi|7508442|pir||T25280 hypothetical protein T25E12.10 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • CE16471 WBGene00012025 Lectin C-type domain short and long forms (2 domains) status:Partially_confirmed TR:O45824 protein_id:CAB04828.1 [wormpep132.fasta]
  • 16471 WBGene00012025 locus:clec-38 Lectin C-type domain short and long forms (2 domains) status:Partially_confirmed TR:O45824 protein_id:CAB04828.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • Lectin C-type domain short and long forms (2 domains) status:Partially_confirmed TR:O45824 protein_id:CAB04828.1 [wormpep115.fasta.reversed]
  • CE16471 Lectin C-type domain short and long forms (2 domains) status:Predicted TR:O45824 protein_id:CAB04828.1 [wormpep80.hongbin]
  • CE16471 WBGene00012025 locus:clec-38 Lectin C-type domain short and long forms (2 domains) status:Partially_confirmed UniProt:O45824_CAEEL protein_id:CAB04828.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE16471 WBGene00012025 locus:clec-38 Lectin C-type domain short and long forms (2 domains) status:Partially_confirmed UniProt:O45824_CAEEL protein_id:CAB04828.1| [wormORF-contam.fasta]
  • C-type LECtin family member (clec-38) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein T25E12.10 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE16471 WBGene00012025 locus:clec-38 Lectin C-type domain short and long forms (2 domains) status:Partially_confirmed UniProt:O45824 protein_id:CAB04828.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
    • Organism: Caenorhabditis elegans
    Length: 382 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    Biological Process: body morphogenesis [IMP]
    Molecular Function: sugar binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIFYDDPLE RLNQPIKTKS YRKKQVVQRV HVFIFDNWKL ILLGILNLIF LIIAIVFAIL  60
   61 FFVGSADCAQ LPDYTTSPAS QLTTSAISSR TSEVQTNAIT TTQGTPSNKT STTTPSTSKV 120
  121 ICASGFTLVG TKCGKLVSSN QPRTEADSIC KGYGGSTLFS VRNEQETRDM LDFVKDSNID 180
  181 FLWTGLVCNQ TARTSCIWDV KSGTTADYNN FADGFPNVVY GYCIYFIVTG NSAGQWGSEQ 240
  241 CSQLMNFVCE LPTTIRDPDC KYNYNKNCYI RFDITLTIPQ AQRFCNEKGA DLVSIHSANE 300
  301 NRFILTIYDI HGQILLGGLA PAVDFIVWLD GSPTTYSNLL YFYDTRSCVL MTVARGGPYD 360
  361 GDWYTMNCNF QEFFLCKRAI DF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..117] MSA 3.123995 View MSA. No confident structure predictions are available.
    2 View Details [118..251] PSI-BLAST 16.045757 Snake coagglutinin alpha chain
    3 View Details [252..382] PSI-BLAST 22.154902 No description for 2h2rA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.898007087596805 bayes_pls_golite062009
  • protein binding
    		•  0.182614790301811 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle