YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	clec-38
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIFYDDPLE RLNQPIKTKS YRKKQVVQRV HVFIFDNWKL ILLGILNLIF LIIAIVFAIL  60
   61 FFVGSADCAQ LPDYTTSPAS QLTTSAISSR TSEVQTNAIT TTQGTPSNKT STTTPSTSKV 120
  121 ICASGFTLVG TKCGKLVSSN QPRTEADSIC KGYGGSTLFS VRNEQETRDM LDFVKDSNID 180
  181 FLWTGLVCNQ TARTSCIWDV KSGTTADYNN FADGFPNVVY GYCIYFIVTG NSAGQWGSEQ 240
  241 CSQLMNFVCE LPTTIRDPDC KYNYNKNCYI RFDITLTIPQ AQRFCNEKGA DLVSIHSANE 300
  301 NRFILTIYDI HGQILLGGLA PAVDFIVWLD GSPTTYSNLL YFYDTRSCVL MTVARGGPYD 360
  361 GDWYTMNCNF QEFFLCKRAI DF

Type	Start	End	Confidence
Cytoplasmic	1	39	0.88
Transmembrane Helix	40	63	0.90
Non-Cytoplasmic	64	382	0.88