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Protein Overview: his-4

General Information:
Name(s) found: his-4 / CE16386 [WormBase]
Description(s) found:
Found 15 descriptions.
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  • WBGene00001878 locus:his-4 histone H2B status:Partially_confirmed UniProt:Q27894 protein_id:CAB07654.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 141 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    nucleosome [IEALink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    nucleosome assembly [IEALink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAINPFFTLV QRPVQSIEMA PPKPSAKGAK KAAKTVTKPK DGKKRRHARK ESYSVYIYRV  60
   61 LKQVHPDTGV SSKAMSIMNS FVNDVFERIA AEASRLAHYN KRSTISSREI QTAVRLILPG 120
  121 ELAKHAVSEG TKAVTKYTSS K

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..141] PSI-BLAST 42.30103 Histone H2B

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.73700145395396 bayes_pls_golite062009
  • DNA binding
    		•  1.04127970884713 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.86554830065808 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.57702121108343 bayes_pls_golite062009
  • protein binding
    		•  0.260428734715028 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle