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Protein Overview: CE16195

General Information:
Name(s) found: CE16195 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00010478 Putative H\/ACA ribonucleoprotein complex subunit 4 status:Confirmed UniProt:O17919 protein_id:CAB07244.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 445 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: tRNA processing [IEALink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed article]
    RNA processing [IEALink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: RNA binding [IEALink to PubMed article]
    pseudouridylate synthase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKDKRSKL EGDDLAEAQQ KGSFQLPSSN ETAKLDASQW PLLLKNYDKL NVRTNHYTPH  60
   61 VEGVSPLKRD IKNYISSGFF NLDKPSNPSS HEVVSWIKRI LRCEKTGHSG TLDPKVSGCL 120
  121 IVCIDRTTRL AKSQQGAGKE YICIFKLHEE VEDDRKVKQA LEKLTGALFQ RPPLISAVKR 180
  181 QLRIRTVYEN KFIEYDPAQQ MGIFNCICES GTYVRTICVH LGLILGCGGQ MQELRRNRSG 240
  241 ICDENENMVT MHDVLDAQYL LDTQKDESYM RHIVRPLEAL LTQHKRVVVK DSCINAICYG 300
  301 AKILIPGILR YDDDIEVGKE IVIMSTKGEA ICIAIAQMNT STIASVDHGV VAKSKRVIME 360
  361 RDVYGRKWGL GPVASKKKQM VKDGLLDKFG KPNDTTPKSW AKEYVQTSTK KEVKKEETPD 420
  421 EEEEEAPKKK SKKSKKQESS DSDSD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..445] PSI-BLAST 85.0 No description for 2hvyA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • pseudouridine synthase activity
    		•  5.60483019625575 bayes_pls_golite062009
  • intramolecular transferase activity
    		•  4.62815459483632 bayes_pls_golite062009
  • isomerase activity
    		•  3.43067391737824 bayes_pls_golite062009
  • catalytic activity
    		•  2.39224964671205 bayes_pls_golite062009
  • ligase activity
    		•  0.636073507077293 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle