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View Structure Prediction Details

Protein: CE16195
Organism: Caenorhabditis elegans
Length: 445 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16195.

Description E-value Query
Range
Subject
Range
DKC1_MOUSE - H/ACA ribonucleoprotein complex subunit 4 OS=Mus musculus GN=Dkc1 PE=1 SV=3
479.0 [0..10] [445..22]

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Predicted Domain #1
Region A:
Residues: [1-445]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKDKRSKL EGDDLAEAQQ KGSFQLPSSN ETAKLDASQW PLLLKNYDKL NVRTNHYTPH  60
   61 VEGVSPLKRD IKNYISSGFF NLDKPSNPSS HEVVSWIKRI LRCEKTGHSG TLDPKVSGCL 120
  121 IVCIDRTTRL AKSQQGAGKE YICIFKLHEE VEDDRKVKQA LEKLTGALFQ RPPLISAVKR 180
  181 QLRIRTVYEN KFIEYDPAQQ MGIFNCICES GTYVRTICVH LGLILGCGGQ MQELRRNRSG 240
  241 ICDENENMVT MHDVLDAQYL LDTQKDESYM RHIVRPLEAL LTQHKRVVVK DSCINAICYG 300
  301 AKILIPGILR YDDDIEVGKE IVIMSTKGEA ICIAIAQMNT STIASVDHGV VAKSKRVIME 360
  361 RDVYGRKWGL GPVASKKKQM VKDGLLDKFG KPNDTTPKSW AKEYVQTSTK KEVKKEETPD 420
  421 EEEEEAPKKK SKKSKKQESS DSDSD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 85.0
Match: 2hvyA
Description: No description for 2hvyA was found.

Predicted functions:

Term Confidence Notes
pseudouridine synthase activity 5.60483019625575 bayes_pls_golite062009
intramolecular transferase activity 4.62815459483632 bayes_pls_golite062009
isomerase activity 3.43067391737824 bayes_pls_golite062009
catalytic activity 2.39224964671205 bayes_pls_golite062009
ligase activity 0.636073507077293 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle