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Protein Overview: col-142

General Information:
Name(s) found: col-142 / CE13654 [WormBase]
Description(s) found:
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  • WBGene00000715 locus:col-142 status:Confirmed UniProt:O17036 protein_id:CCD68158.1 [WormBase]
  • pir||T32248 hypothetical protein T15B7.4 - Caenorhabditis elegans [NCBI NR]
  • gi|2384942|gb|AAB69961.1| Collagen protein 142, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17564308|ref|NP_504736.1| COLlagen family member (col-142) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE13654 WBGene00000715 locus:col-142 collagen status:Confirmed TR:O17036 protein_id:AAB69961.1 [wormpep150.fasta]
  • 13654 WBGene00000715 locus:col-142 collagen status:Confirmed TR:O17036 protein_id:AAB69961.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • COLlagen structural gene (col-142) [Caenorhabditis elegans]gi|2384942|gb|AAB69961.1| Collagen protein 142 [Caenorhabditis elegans]gi|7507861|pir||T32248 hypothetical protein T15B7.4 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:col-142 collagen status:Confirmed TR:O17036 protein_id:AAB69961.1 [wormpep115.fasta.reversed]
  • CE13654 collagen status:Predicted TR:O17036 protein_id:AAB69961.1 [wormpep80.hongbin]
  • CE13654 WBGene00000715 locus:col-142 collagen status:Confirmed UniProt:O17036_CAEEL protein_id:AAB69961.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE13654 WBGene00000715 locus:col-142 collagen status:Confirmed UniProt:O17036_CAEEL protein_id:AAB69961.1| [wormORF-contam.fasta]
  • Collagen protein 142 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • T15B7.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE13654 WBGene00000715 locus:col-142 collagen status:Confirmed UniProt:O17036 protein_id:AAB69961.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE13654 WBGene00000715 locus:col-142 collagen status:Confirmed UniProt:O17036 protein_id:CCD68158.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE13654 WBGene00000715 locus:col-142 status:Confirmed UniProt:O17036 protein_id:CCD68158.1 [wormpep246-ecoli-contam.fasta]
  • COLlagen OS=Caenorhabditis elegans GN=col-142 PE=4 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 325 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEALink to PubMed article]
    Biological Process: phosphate transport [IEALink to PubMed article]
    Molecular Function: structural constituent of cuticle [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASTLVTVA SAASGIAIVV CVFTVGMIFN DINSFYDEKI GELKEFKGYE QIAWQAMIPT  60
   61 TRPSSGSSFL LGRNKRQAQC NCGAQSRGCP AGPPGPPGQP GAPGEQGHPG LAGQPGSGAR 120
  121 INPATGRPGF CITCPAGAPG PAGPPGAPGP KGNNGQPGAP AQSGGRGPPG PRGPAGDAGS 180
  181 PGQPGHPGSP GNPGRGGQRS RGLPGPSGRP GPPGPAGGPG QPGHSGGAGS PGPQGPPGPS 240
  241 GQPGHSGNDG VPGAPGNPGS PGGDAAYCPC PARSAAIAAR SRVAARSRVA ARSRVVARSR 300
  301 VVARNRVAAK RRAAVRRHRV QKAVA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..325] PSI-BLAST 34.221849 No description for 1y0fA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle