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View Structure Prediction Details

Protein: col-142
Organism: Caenorhabditis elegans
Length: 325 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-142.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
306.0 [0..25] [323..1436]

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Predicted Domain #1
Region A:
Residues: [1-325]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASTLVTVA SAASGIAIVV CVFTVGMIFN DINSFYDEKI GELKEFKGYE QIAWQAMIPT  60
   61 TRPSSGSSFL LGRNKRQAQC NCGAQSRGCP AGPPGPPGQP GAPGEQGHPG LAGQPGSGAR 120
  121 INPATGRPGF CITCPAGAPG PAGPPGAPGP KGNNGQPGAP AQSGGRGPPG PRGPAGDAGS 180
  181 PGQPGHPGSP GNPGRGGQRS RGLPGPSGRP GPPGPAGGPG QPGHSGGAGS PGPQGPPGPS 240
  241 GQPGHSGNDG VPGAPGNPGS PGGDAAYCPC PARSAAIAAR SRVAARSRVA ARSRVVARSR 300
  301 VVARNRVAAK RRAAVRRHRV QKAVA

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Detection Method: PSI-BLAST
Confidence: 34.221849
Match: 1y0fA
Description: No description for 1y0fA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle