YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-142
Protein type:	Globular with Signal Peptide
Type Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASTLVTVA SAASGIAIVV CVFTVGMIFN DINSFYDEKI GELKEFKGYE QIAWQAMIPT  60
   61 TRPSSGSSFL LGRNKRQAQC NCGAQSRGCP AGPPGPPGQP GAPGEQGHPG LAGQPGSGAR 120
  121 INPATGRPGF CITCPAGAPG PAGPPGAPGP KGNNGQPGAP AQSGGRGPPG PRGPAGDAGS 180
  181 PGQPGHPGSP GNPGRGGQRS RGLPGPSGRP GPPGPAGGPG QPGHSGGAGS PGPQGPPGPS 240
  241 GQPGHSGNDG VPGAPGNPGS PGGDAAYCPC PARSAAIAAR SRVAARSRVA ARSRVVARSR 300
  301 VVARNRVAAK RRAAVRRHRV QKAVA

Type	Start	End	Confidence
Signal Peptide	1	21	0.62
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	325	0.94